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13 protocols using ti s l100

1

Vibrio anguillarum Structural and Viability Assay

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V. anguillarum was cultured to logarithmic phase and resuspended in PBS to 1×106 CFU/ml. The bacteria were incubated with 4 µM rPoCXCL10 or PBS at room temperature for 4 h. After incubation, the bacteria were washed and resuspended in ultrapure water and observed with a transmission electron microscope (TEM) (Hitachi, HT7700, Japan) as described previously (48 (link)). For the PI staining assay, V. anguillarum was pretreated with rPoCXCL10 or PBS as above, and then stained with PI (2 µg/ml) for 10 min. The bacteria were observed with a fluorescence microscope (TiS/L100, Nikon, Tokyo, Japan).
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2

Tracer Particle Tracking in Gastric Dissolution

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Tracer tracking experiments were performed by adding 2 µm polystyrene (PS) tracer particles (9003‐53‐6, Polysciences Inc) to a solution of gastric acid stimulant with 0.6% Triton X‐100 surfactant (Sigma Aldrich) for the tracer only case (tracer particles were diluted ten times from a stock concentration of 2.62%). For the tracer trajectory analysis for the pill formulations, the same tracer particles were embedded into pills during the fabrication process at a 1.0% loading. Later, pills were dissolved in the same gastric acid simulant containing Triton X‐100. Videos were recorded at 30 fps on a Nikon Ti‐S/L100 inverted optical microscope coupled with a Hamamatsu digital camera C11440. Tracer tracking was performed with the NIS Elements AR 3.2 software. MSD calculation was performed with the publicly available MATLAB function (msdanalyzer) for a group of 40 particles (n = 40).[38] Overlapped stacks of images were prepared with a publicly available ImageJ plugin, Flowtrace.[39] The stacks correspond to 1 s of motion. The color of the images was inverted to show a black background. Lighter colored tails represent the most recent position of the tracer particle while darker colored tails represent the oldest position.
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3

Evaluating Cytokalasin K Effects on Cellular Morphology

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To examine cell morphology, the cells of dTHP-1 were incubated with 500 nM CytK and then observed with a microscope (Ti-S/L100, Nikon). The movie was processed using Image-Pro Plus 6.0. To examine cell membrane integrity, the cell culture was supplemented with propidium iodide (2 μg/ml) (PI, ST511, Beyotime), and observations were conducted with a confocal microscope (Zeiss LSM 710). The percent of PI-positive cells was calculated at least from five random fields for each experiment. During immunofluorescence microscopy, the cells of dTHP-1 were treated with CytK (500 nM) for 25 min, washed in PBS three times, and then treated with 4% paraformaldehyde for 10 min. After washing as above, the cells were incubated with permeabilization solution (0.2% Triton X-100 in PBS) for 5 min and blocked with 5% BSA for 1 h. The cells were incubated with rabbit anti-CytK (1:100 dilution in 1% BSA) overnight at 4 °C and treated with goat-anti-rabbit antibody (Alexa Fluor 488) (ab150081, Abcam) (1:500 dilution) for 1 h, followed by DAPI (C1002, Beyotime) staining for 10 min. After each incubation step, 0.1% Tween-20 (in PBS) was used to wash the cells. A confocal microscope (Zeiss LSM 710) was used to observe the cells. Scanning electron microscopy was performed as reported previously [47 (link)].
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4

Electron Microscopy Analysis of Antimicrobial Effects

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Electron microscopy was performed based on previous methods [53 (link)]. For microscopy with SEM (S-3400N, Hitachi, Tokyo, Japan), B. cereus MB1 and M. luteus were cultured in LB medium to logarithmic phase, and the cells were washed and resuspended in PBS to 1 × 106 CFU/mL. The cells were pretreated with 1 × MBC rCrus1 or PBS at 37 °C for 2 h. After treatment, the cells were fixed with 5% glutaraldehyde in PBS (pH 7.4) for 2 h and dehydrated in a series of increased concentration of ethanol (30, 50, 70, 80, 90 and 100%) for 10 min at 4 °C. The cells were treated with isoamyl acetate for 10 min, critical point-dried (Hitachi-HCP, Hitachi, Japan), sputter-coated with platinum (MC1000, Hitachi, Japan) and examined with a SEM. For microscopy with TEM (HT7700, Hitachi, Tokyo, Japan), B. cereus and M. luteus were pretreated with rCrus1 or PBS as above. TEM microscopy was performed as previously reported [54 (link)]. For the PI assay, B. cereus MB1 and M. luteus were pretreated with rCrus1 or PBS as above. The sample was stained with a PI staining kit (BestBio, Shanghai, China) following the manufacturer’s instruction. The cells were observed with a fluorescence microscope (TiS/L100, Nikon, Tokyo, Japan).
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5

Morphological and Physiological Characterization of Bacterial Strain P18

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For morphological observation, P18 was cultured in Marine 2216E medium at 28°C to an OD600 of 0.8. The culture was centrifuged at 5,000 rpm for 10 min, and the bacterial pellet was re-suspended in ddH2O. For spore observation, P18 was cultured at 28°C in Marine 2216E medium containing 5mg/L MnSO4 for 3 days with shaking (180 rpm/min) (Osadchaia et al., 1997 (link)); the culture was then centrifuged and re-suspended in ddH2O. After fixation with glutaraldehyde and dehydration with acetone, the vegetative cells and spores of P18 were observed with a transmission electron microscope (Hitachi, JEM-2100, Japan). The spores were also stained with a Spore Staining Kit (HaiBo, China) and observed with a light microscope (Ti-S/L100, Nikon, Japan). The temperature range of growth was determined by culturing P18 at 4, 16, 28, 37, and 50°C in Marine 2216E medium for 36 h to 7 days. The pH range was determined by culturing P18 in Marine 2216E medium of different pH (pH 5–10, with an increment of 1 pH unit). The NaCl range was determined by culturing P18 in 2216E medium with different salinities (NaCl 0–8%, w/v, with an increment of 1%). The motility of P18 was determined as reported previously (Gu et al., 2019 (link)).
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6

Cytotoxicity Assay of V13 and δVFH

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The cytotoxicity assay was performed as reported previously.42 Briefly, the PMA-pretreated THP-1 cells were incubated with V13 or δVFH at different concentrations (15.625–1000 nM). In the case where a specific inhibitor was used, the cells were pretreated with the inhibitor for 1 h and then treated with V13 or δVFH as above. The inhibitors included MCC950 (50 μM) (PZ0280, Sigma), Nec-1s (50 μM) (S8641, Selleck), Z-DEVD-FMK (50 μM) (S7312, Selleck), Ac-YVAD-CMK (50 μM) (SML0429, Sigma), NSA (20 μM) (S8251, Selleck), and BAPTA-AM (50 μM) (S7534, Selleck) targeting NLRP3, RIPK1, caspase 3, caspase 1, GSDMD, and Ca2+, respectively. After treatment, the cells were observed with a microscope (Ti-S/L100, Nikon, Japan), and lactate dehydrogenase (LDH) release was measured with the CytoTox 96 Non-Radioactive Cytotoxicity Assay kit (G1780, Promega) according to the manufacturer’s instruction. Briefly, the supernatant of the cells was transferred to a 96-well plate. An equal volume of CytoTox 96 Reagent was added to each well. The plate was incubated for 30 min at room temperature. Stop Solution was then added to the plate, and absorbance at 490 nm was determined with a microplate reader (Synergy H1, BioTek, USA).
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7

Morphological and Functional Characterization of Bacterium MB1

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To observe the morphology of MB1 on the solid medium, MB1 was streaked in 2216EA plate and incubated at 28 °C overnight. The scanning electron microscope (SEM) and transmission electron microscope (TEM) observations were performed as previously reported [22 ]. Sporulation was induced by continuous culturing of MB1 in 2216E medium supplemented with 5 mg/L MnSO4 at 28 °C for more than 72 h. The spores were stained using a spore staining kit (Solarbio, Beijing, China), followed by observation with a microscope (Ti-S/L100, Nikon, Tokyo, Japan). MB1 growth at different temperatures, pH, and NaCl was examined as reported previously [23 (link)]. For the haemolysis assay, MB1 was cultured in marine 2216E medium to an OD600 of 0.8 and centrifuged at 8000 g. The bacterial cells and supernatant were collected after centrifugation. The cells were resuspended in PBS to 108 CFU/mL. Ten microlitres of cell suspension, supernatant, and 2% TritonX-100 were each dropped onto filter discs in a 2216EA plate containing 5% sheep blood. The plate was incubated at 28 °C for 24 h and observed for haemolysis. For swimming analysis, 10 μl of the above MB1 suspension was dropped onto a 2216EA plate containing 0.3% (w/v) agar. The plate was incubated at 28 °C for 24 h and observed for bacterial motility.
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8

Microscopic Characterization of Micromotors

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Scanning electron microscopy and energy-dispersive X-ray mapping analysis images were obtained using a JEOL JSM 6335F instrument, at an acceleration voltage of 10 kV and 22 kV, respectively. High resolution transmission electron microscopy images were obtained using a JEOL JEM 3000 F microscope at an acceleration voltage of 300 kV. An inverted optical microscope (Nikon Eclipse Instrument Inc. Ti-S/L100), coupled with 20× objective was used to track the speed of the micromotors. Fluorescence images were obtained using an Epi-fluorescence attachment with a UV-2E/C (DAPI) filter cube. UV-VIS experiments were carried out using a Perkin-Elmer Lambda 20 spectrophotometer. Fluorescence spectra were recorded at 25 °C with a PerkinElmer LS-50B luminescence spectrophotometer equipped with a Xe flash lamp. The excitation and emission slit widths were 5 nm and scan speed was 1000 nm min–1.
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9

Antimicrobial Activity of Crus2 on B. cereus and V. harveyi

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B. cereus MB1 and V. harveyi were cultured in corresponding media to OD600 of 0.8. The bacteria were resuspended in PBS to 1 × 106 CFU/mL. Crus2 or Crus2DC (1 × MBC) was added to the bacteria, and the mixture was incubated at 28 °C for 2 h. The cells were stained with a PI Staining Kit (BestBio, Shanghai, China) and examined using a fluorescence microscope (TiS/L100, Nikon, Tokyo, Japan). For electron microscopy, the above treated bacterial samples were processed as previously described [22 (link)] and observed with scanning electron microscopy (S-3400N, Hitachi, Tokyo, Japan) and transmission microscopy (HT7700, Hitachi, Tokyo, Japan).
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10

Tumor Vascular Imaging in Mice

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Balb/C mice bearing C26 tumors were injected with saline or DMXAA (15.0 mg kg–1), followed by 0.2 mL (2 nmol) of fibrinogen-FITC. After 4 h, the mice were sacrificed, tumor and heart, liver, spleen, lung, kidney were collected and photographed. Subsequently, these tumors and normal organs were submitted to H&E staining and frozen section respectively. The histological alterations were observed by microscopy (Nikon TI-S/L100), and the cryogenic slices were stained with 4′,6-diamidino-2-phenylindole (DAPI), and images were taken by confocal laser-scanning microscope (CLSM, Carl Zeiss LSM 710).
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