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4 protocols using universal detection kit

1

Culturing and Labeling Neuronal Cell Lines

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Cath.-a-differentiated (CAD) cells were purchased from Sigma-Aldrich and cultured in DMEM/F12 medium (Gibco) supplemented with 8% fetal calf serum, 1% L-Glutamine, and 1% penicillin-streptomycin. Two to four hours prior to imaging, CAD cells were plated on coverslips coated overnight at 4 °C with 10 µg/mL laminin (Sigma-Aldrich). DMEM/F12 medium without phenol red (Gibco) supplemented with 15mM HEPES was used for live-cell imaging. Cell lines were also routinely tested for mycoplasma using the Universal Detection Kit (ATCC). PFN1 KO cells were generated with CRISPR/Cas9 as previously described (28 (link)). CAD cells were transfected with plasmid DNA via electroporation as previously described (28 (link)) or with LipoD293 (SignaGen, “Hard-To-Transfect Mammalian Cell” protocol). Cells expressing HaloTag constructs were incubated overnight with 10–100 nM Janelia Fluor 646 HaloTag ligand (Promega) (61 (link)). EGFP-NM2A knock-in MEFs were generated from mice (62 (link)), and isolated and cultured as previously described (40 (link)).
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2

CRISPR Knockout of Profilin-1 in CAD Neuroblastoma Cells

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Cath.-a-differentiated (CAD) cells (purchased from Sigma-Aldrich) were cultured in DMEM/F12 medium (Gibco) supplemented with 8% fetal calf serum, 1% L-Glutamine, and 1% penicillin-streptomycin. Prior to imaging, CAD cells were plated on coverslips coated with 10 μg/mL Laminin (Sigma-Aldrich). DMEM/F12 medium without phenol red (Gibco) supplemented with 15mM HEPES was used for live-cell imaging. CAD cells are a unique mouse neuroblastoma cell line that differentiate into a neuronal-like cell morphology upon serum withdrawal [56 (link)]. We routinely use serum withdrawal to validate CAD cells by ensuring their capacity to undergo neuronal differentiation as evidenced by the formation of long (> 100 μm), narrow projections after 2 days. Cell lines were also routinely tested for mycoplasma using the Universal Detection Kit (ATCC). PFN1 KO cells were generated with CRISPR/Cas9 by transfecting CAD cells with the constructs described above. One week after transfection, selection for cells modified by CRISPR/Cas9 was performed with 10 μg/mL puromycin (Santa Cruz Biotechnology). This concentration was chosen as it kills 100% of cells that do not have the puromycin resistance gene within 24 hours [8 (link), 10 (link), 37 (link)]. puromycin was removed 24 hours prior to experiments that required transfection.
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3

Establishment of hACE2-Expressing Cell Line

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Vero E6 (ATCC, CRL-1586) and 293T cells (ATCC, CRL-3216; kind gift of Dr. Viviana Simon), were maintained in DMEM (Corning) supplemented with 10% FB (Peak Serum) and penicillin/streptomycin (Corning) at 37°C and 5% CO2. hACE2-293T cells were generated for this study. Briefly, 293T cells were transduced with a lentiviral vector expressing human ACE2. Puromycin resistant cells with hACE2 surface expression were sorted after staining with AlexaFluor 647-conjugated goat anti-hACE2 antibodies. Cells were then single-cell-cloned and screened for their ability to support SARS-CoV-2 replication. All cell lines used in this study were regularly screened for mycoplasma contamination using the Universal Detection Kit (ATCC, 30-1012K).
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4

SARS-CoV-2 Infection in ACE2-Expressing Cells

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Vero E6 (ATCC, CRL-1586) and 293T cells (ATCC, CRL-3216; kind gift of Dr. Viviana Simon), were maintained in DMEM (Corning) supplemented with 10% FB (Peak Serum) and penicillin/streptomycin (Corning) at 37°C and 5% CO2. hACE2-293T cells were generated for this study. Briefly, 293T cells were transduced with a lentiviral vector expressing human ACE2. Puromycin resistant cells with hACE2 surface expression were sorted after staining with AlexaFluor 647-conjugated goat anti-hACE2 antibodies. Cells were then single-cell-cloned and screened for their ability to support SARS-CoV-2 replication. All cell lines used in this study were regularly screened for mycoplasma contamination using the Universal Detection Kit (ATCC, 30-1012K). Cells were infected with SARS-CoV-2, isolate USA-WA1/2020 (BEI Resources NR-52281) under biosafety level 3 (BSL3) containment in accordance to the biosafety protocols developed by the Icahn School of Medicine at Mount Sinai. Viral stocks were grown in Vero E6 cells as previously described (Amanat et al., 2020 (link)), and were validated by genome sequencing.
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