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12 protocols using hmgb1

1

Atherosclerotic Plaque Quantification and Cytokine Analysis

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The size of the aortic sinus lesions was quantified as described in a previous paper [21 (link)], with a slight modification. The heart and aorta were perfused with phosphate-buffered saline for 10 minutes and then with 3.5% paraformaldehyde for 5 minutes. The heart was then rapidly removed, fixed in 10% buffered neutral formalin for 24 h, and washed in tap water to remove the formalin. Atherosclerotic plaque samples were stained with Oil Red O. Six lesion areas were compared by using computer-supported morphometry (Image-Pro Plus; Media Cybernetics, Rockville, MD, USA) at 30-μm intervals, and the average lesion size was estimated (n = 22). To detect the cytokine level, frozen sections were stained individually with 1:200 dilutions of anti-TNF-α, CX3CL1, or HMGB-1 antibodies (Santa Cruz Biotechnology, Santa Cruz, CA, USA). Harris hematoxylin was used as the counterstain.
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2

Hepatic Protein Analysis by Western Blot

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Hepatic tissues were homogenized in RIPA lysis buffer, and quantitative protein analysis was determined by Bradford protein assay kit (Bio Basic Inc., Ontario, Canada). Twenty μg of extracted protein from the liver of all studied groups was separated by SDS-PAGE on 4–20% polyacrylamide gradient gels and electroblotted onto polyvinylidene difluoride (PVDF) membranes using Bio-Rad Trans-Blot Turbo. After incubation in 5% nonfat dry milk, Tris-HCl, 0.1% Tween 20 for 1 hr, primary antibodies were added and incubated at 4°C overnight. The primary antibodies used were TLR4, HMGB1, NF-κB, and caspase-3 (Santa Cruz Biotechnology, Santa Cruz, CA, USA). Appropriate secondary antibodies were incubated for 2 hr at room temperature. After being washed twice in 1 × TBS-T, densitometric analysis of the immunoblots was performed in all studied samples against the control sample of housekeeping protein beta-actin by protein normalization on the ChemiDoc MP imaging system.
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3

Protein Extraction and Western Blot Analysis

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Total protein was extracted from the L4 and L5 DRGs using methods described earlier [15 (link)]. The primary antibodies against pCaMKIV, CaMKIV, HMGB1 (1:500; Santa Cruz, USA) were used in Western blot (WB). To verify equal loading of protein, the blots were reprobed with primary monoclonal antibody against β-actin (ProteinTech Company, USA).
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4

Frozen Testicular Tissue Protein Analysis

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Frozen testicular tissue was prepared with lysis buffer (150 mM NaCl, 20 mM Tris HCl [pH 7.4], 0.1% sodium dodecyl sulfate [SDS], 1.0% Nonidet P-40, 0.5% sodium-deoxycholate, 0.2 mM phenylmethylsulfonyl fluoride, protease inhibitor cocktails, and phosphates inhibitors). Equal amounts of proteins were separated by 10% SDS-polyacrylamide gel electrophoresis (PAGE), and electrotransferred to polyvinylidene fluoride (PVDF) membranes (Millipore, USA). The proteins were then blocked with 5% BSA for 2 h at room temperature. The membranes were incubated with appropriately diluted rabbit anti-rat primary antibodies for the detection of HO-1 (Abcam, UK), MFN-2 (Boshide, Wuhan, China), HMGB-1 (Santa Cruz Biotechnology Co., USA), and mouse anti-rat β-actin (Santa Cruz Biotechnology Co., USA) overnight at 4°C. The membranes were then incubated with the relevant secondary antibodies (HO-1, MFN-2, HMGB-1: anti-rabbit IgG, β-actin: anti-mouse IgG; all purchased from Boshide, Wuhan, China) for 2 h at 20°C. The proteins were detected with an enhanced chemiluminescence (ECL) detection system. β-Actin served as the internal control. The analysis was repeated thrice.
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5

Immunoblotting of HMGB1, AdipoR1, AdipoR2, SOD2, and β-Actin

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Proteins were extracted using RIPA buffer, and the protein concenteration was evaluated using BCA assay then resolved on 10% Bis-Tris gels (NuPAGE, Novex, Thermo Fischer), transferred to PVDF membrane, and immunoblotted using Primary antibodies HMGB1 (sc-548457), AdipoR1 (sc-518030), and AdipoR2 (sc-514045)(purchased from Santa Cruz, Germany), and SOD2 (cst#13141), and Beta-Actin (cst#3700) (purchased from cell signaling, USA). It was followed by incubation with appropriate horseradish peroxidase-conjugated secondary antibodies (Cell signaling), and the signal was detected using a chemiluminescence substrate (Pierce, Rockford, IL). Finally, the signal intensity was quantified with a densitometer (GeneTool software; SynGene, Frederick, MD).
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6

Quercetin Mitigates Gastric Injury

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Quercetin was purchased from Sigma-Aldrich Co (St. Louis, MO, USA). Antodine® tablets (famotidine), as the positive control drug, was purchased from Amoun Pharmaceutical Company (Cairo, Egypt). Ethanol was supplied from National Research Center (Dokki, Giza, Egypt). Hematoxylin and eosin (H&E) and phosphate buffered saline (PBS) were purchased from Sigma-Aldrich Co (St. Louis, MO, USA). Malonaldehyde (MDA), superoxide dismutase (SOD) and catalase (CAT) kits were purchased from Biovision Inc (Milpitas, CA, USA). The enzyme-linked immunosorbent assay (ELISA) kits for rat Nrf2 (Northwest Life Science Specialties, WA, USA), HO1 (Biovision Inc., Milpitas, CA, USA), TNFα (Biolegend, San Diego, CA, USA), B-Cell Leukemia/Lymphoma 2 (Bcl2) and Bcl2-Associated X Protein (Bax) (Cloud Clone Corp., Katy, TX, USA). Antibodies against NFκB-p65, HMGB1 and β-actin were purchased from Santa Cruz Biotechnology, Inc (Heidelberg, Germany) and horseradish peroxidase-conjugated secondary antibody was obtained from (Novus Biologicals LLC, Colorado, USA).
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7

HMGB1 Signaling Inhibition Assay

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pCAGGS-HMGB1 (pHMGB1) and pCAGGS (empty vector) were kindly provided by Professor Tadatsugu Taniguchi (University of Tokyo, Tokyo, Japan) [40 (link)]. HMGB1 blocker glycyrrhizin was purchased from Sigma. glycyrrhizin was dissolved with PBS. TLR2/4 inhibitor OxPAPC was purchased from invivogen. RAGE-Fc was purchased from R&D Systems. The RAGE, HMGB1, and control siRNA were purchased from Santa Cruz Biotechnology. Macrophages were transfected with 200 nM of indicated siRNAs by Mouse Macrophage Nucleofector Kit (Lonza) according to the manufacturer's instructions. HMGB1 and RAGE antibody were obtained from Cell Signaling Technology and GAPDH antibody from Santa Cruz Biotechnology.
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8

Comprehensive Immunomodulatory Assay Protocol

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Thymopentin (TP5) was purchased from Meilunbio. Doxorubicin hydrochloride (DOX) was obtained from Aladdin. Fetal bovine serum albumin (FBS) was purchased from Biowest. Dulbecco's modified Eagle's medium (DMEM) was purchased from Gibco. All assay kits, if not specified, were acquired from Beyotime. The antibodies used were as follows: anti-calreticulin, HMGB1, and CD8 were purchased from Santa Cruz Biotechnology; Ki67 was purchased from Bioss; anti-mouse antibodies (FITC-labeled CD3, FITC-labeled CD11c, FITC-labeled CD25, PE-labeled CD8a, PE-labeled CD86, APC-labeled CD4, APC-labeled CD80, Alexa Flour 647-labeled Foxp3) were all purchased from BioLegend. D-Luciferin, Potassium Salt was purchased from Yeasen.
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9

Protein Expression Analysis by SDS-PAGE

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Proteins were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to nitrocellulose membranes (Amersham Pharmacia Biotech, Buckinghamshire, UK). The membranes were probed with primary antibodies against RAGE and HMGB-1 (Santa Cruz Biotechnology, Santa Cruz, CA, USA) or β-actin (Sigma, St Louis, MO, USA).
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10

Immunohistochemical Analysis of Calreticulin and HMGB-1

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IHC was performed as described preciously (23) . Primary antibodies were calreticulin (sc-373863) and HMGB-1 (sc-56698; Santa Cruz Biotechnology) and GFP (Cell Signaling Technology; 2956). A pathologist (S.I. Vanzulli) performed a blind semi-quantitative scoring and the staining was graded as negative (0), weak (1), moderate (2), and strong (3) . The staining score (scale, 0-300) results from the product between positivity (0%-100%) and intensity.
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