The largest database of trusted experimental protocols

25 protocols using ssea4

1

Pluripotent Stem Cell Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Colonies were fixed for 2 hours at room temperature with 4 % paraformaldehyde and then incubated at room temperature for 15 minutes with 1 % Triton X-100/phosphate-buffered saline (PBS). Cells were washed three times in PBS and blocked at 37 °C for over 3 hours with 4 % normal goat serum (Chemicon). Subsequently, cells were incubated at 4 °C overnight with primary antibody to Oct4 (1:500, Santa Cruz), SSEA4 (1:500, Life Technology), Nanog (1:500, Bethyl laboratories), TRA-1-60 (1:250, Life Technology), and TRA-1-81 (1:250, Life Technology). Cells were washed three times in PBS and incubated at 37 °C for 2 hours with goat anti-rabbit Alexa-Flour 594-conjugated (Life technologies) and goat anti-mouse Alexa-Fluor 488-conjugated (Life Technology) secondary antibodies (1:500 in 1 % normal goat serum in PBS). Unbound secondary antibodies were removed in three washes with PBS. Nuclei were identified by 1 μg/ml DAPI (Invitrogen) staining at room temperature for 5 minutes. Images were acquired using a confocal laser scanning microscope (LSM 510 META; Carl Zeiss).
+ Open protocol
+ Expand
2

Maintenance and Characterization of iPSCs

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cultured iPSCs were transferred onto Matrigel-coated 6-well plates containing DMEM/GlutaMAX (Life Technologies) supplemented with 10% fetal bovine serum and a Rho kinase inhibitor, Y-27632 (10 mM prepared in 100 μl of Dulbecco’s phosphate-buffered saline) (Sigma-Aldrich). After the cells adhered, the medium was changed to chemically defined Essential 8 medium (Life Technologies). The medium was changed daily, and cells were passaged every 5–6 days using Accutase Cell Detachment Solution (STEMCELL Technologies, Vancouver, Canada)35 (link).
The iPSC clones were fixed with 4% paraformaldehyde and immunostaining was performed using the following primary antibodies: Sox2, Tra-1–60, SSEA-4 and Oct4 and Alexa Fluor 594-conjugates or 488-conjugated secondary antibody (Life technologies). Alkaline phosphatase live cell staining was also performed (Life Technologies). These factors all stained positively in iPSC clones which were detected by indirect immunofluorescence microscopy (Carl Zeiss, Göttingen, Germany; Supplementary Figure S2D). Cell viability and proliferation after UBC KD were assessed by crystal violet staining assay. Cells were stained with crystal violet (Sigma-Aldrich) at the indicated time points.
+ Open protocol
+ Expand
3

Immunostaining of Pluripotent Stem Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunostaining was performed by fixing cells in 4% paraformaldehyde for 15 min at room temperature and then washing with PBS. Cells were then permeabilized with 70% ice-cold ethanol on ice and blocked with 0.5% BSA in PBS for 15 min at room temperature. Cells were then incubated overnight at 4°C with the primary antibody in antibody dilution buffer (0.05% BSA in PBS) at the following concentrations: Nanog (Life Technologies PA1-097, 1:100), SSEA4 (Life Technologies 414000, 1:400), Sox2 (Life Technologies PA1-16968, 1:100), VE-cadherin/CD144 (Sigma V1514, 1:200), PECAM1/CD31 (Abcam ab187377, 1:100). The isotype control antibodies used in this study were mouse IgG1 (Abcam ab172730) and rabbit serum. Cells were washed with PBS and incubated with conjugated secondary antibodies at room temperature in the dark (Life Technologies, 1:300).
+ Open protocol
+ Expand
4

Immunocytochemistry of Pluripotent Stem Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells grown in 8 well glass chamber slides (Nalgene Nunc, International) were washed twice in PBS and fixed in 4% paraformaldehyde for 30 min, followed by permeabilization with 0.1% Triton-X-100 in PBS for 5 min at room temperature (RT). Cells were blocked for 30 min in 3% BSA in PBS. All primary antibodies were diluted in the same blocking buffer and incubated with samples overnight at 4°C. Primary antibodies were obtained from the sources indicated: OCT4, SOX2 and NANOG (Santa Cruz, Santa Cruz, CA); SSEA-3, SSEA-4, Tra-1-60 and Tra-1-81 (eBioscience, San Diego, CA).Cells treated with fluorescently coupled secondary antibody (anti-rabbit Cy3, Jackson ImmunoResearch, 1/200) were incubated for 1 hour at RT. Nuclei were counterstained with 4,6-diamindino-2-phenylindole-2- (DAPI) (Sigma) for 3 min at RT. Preparations were viewed under a BX-60 epifluorescence micro-scope (Olympus, China), and images were captured with an Axiocam digital camera (Carl Zeiss, Jena, Germany, http://www.zeiss.com) and analyzed using KS-300 software (Imaging Associates, Thame, China).
+ Open protocol
+ Expand
5

Multipotent Markers of Labeled MSCs

Check if the same lab product or an alternative is used in the 5 most similar protocols
hMSCs and pMSCs were assessed for expression of multipotent markers (Dominici et al., 2006), performed 24 h after MP labelling (with SiMAG and ScreenMAG, respectively) and 14 days after initial labelling, with repeated passaging and relabelling every 3 days to maintain a high MP level throughout. Cells were harvested with trypsin–EDTA and pelleted by centrifugation for 5 min at 200 × g before washing in PBS. The cell pellets were then resuspended in 100 μl PBS supplemented with 5 μl antibodies against CD29 (Abcam, UK), CD105, CD34 and CD73 (AbdSerotec, UK), CD90 and SSEA4 (eBiosciences, USA) for 30 min at room temperature, before two PBS washes and flow‐cytometry analysis.
+ Open protocol
+ Expand
6

Immunohistochemical Analysis of IL-1β, SSEA-4, and 4-HNE in Prostate Cancer

Check if the same lab product or an alternative is used in the 5 most similar protocols
LNCaP xenografted tumors were sectioned (4 μm thick) and mounted on glass slides, then stained with Meyer’s hematoxylin and eosin (H&E), and immunostained with primary antibodies for IL-1β (Invitrogen). After glass slides were mounted, each sample was observed at a 200× magnification of the microscopic field. For human PCa immunohistochemistry evaluation, tissue sections were immunostained with primary antibodies for SSEA-4 (eBioscience, San Diego, CA, USA), 4-HNE (Abcam), and IL-1β (Invitrogen). Each sample was observed at a 400× magnification of the microscopic field in 10 randomly selected areas. The intensity and extent of staining were evaluated by score, assigning from 0 to 3 where 0 = none, 1 = weak, 2 = intermediate, and 3 = strong. Final scores were computed using a composite of intensity scores multiplied by the extent of staining score. A score of 1–4 was assessed as low expression and 6–9 as high expression.
+ Open protocol
+ Expand
7

Immunofluorescence Staining of iPSCs

Check if the same lab product or an alternative is used in the 5 most similar protocols
iPSCs were cultured on matrigel-coated 6-well plates and fixed with 4% paraformaldehyde for 10 min. Blocking was done for 1 h in 1x PBS, pH 7.4, with 5% FBS and 0.3% Triton X-100. Cells were stained with SSEA4 (eBioscience, Cat. # 12–8843-42) and OCT4 (eBioscience, Cat. # 53–5841-82) antibodies, and Hoechst 33342 dye (ThermoFisher, Cat. # R37605) overnight at 4°C in blocking buffer. Phase contrast and fluorescence images were obtained with a Zeiss Axio Observer Z1 microscope and Hamamatsu EM CCD camera (Cat. # C9100–02).
+ Open protocol
+ Expand
8

Immunostaining of Human iPSCs

Check if the same lab product or an alternative is used in the 5 most similar protocols

Example 11

iPSCs were cultured on matrigel-coated 6 well plates and fixed with 4% paraformaldehyde for 10 min. Blocking was done for 1 h in PBS with 5% FBS and 0.3% Triton X-100. Cells were stained with SSEA4 (eBioscience, Cat. #12-8843-42), OCT4 (eBioscience, Cat. #53-5841-82), and Hoechst 33342 (ThermoFisher, Cat. #R37605) overnight at 4° C. in blocking buffer. Phase contrast and fluorescence images were taken with a Zeiss Axio Observer Z1 microscope and Hamamatsu EM CCD camera (Cat. #C9100-02).

+ Open protocol
+ Expand
9

Immunocytochemical Analysis of Pluripotency and Differentiation

Check if the same lab product or an alternative is used in the 5 most similar protocols
For the immunocytochemical determination of pluripotency and differentiation markers, cells were fixed with PBS containing 4% (vol per vol) paraformaldehyde for 10 min at room temperature. The cells were permeabilized with PBS containing 0.1% Triton X-100 for 10 min at room temperature, then washed with PBS and treated with 1% BSA for blocking. For hiPSCs or reprogramming HDFs, the primary antibodies used were SSEA4 (0.5 µg per mL; eBiosciences), TRA-1-60 (0.5 µg per mL; eBiosciences), NANOG (2 µg per mL, AF1997; R&D Systems), OCT3/4 (1:200, sc-5279; Santa Cruz Biotechnology), MAP2 (1:1000, AB5622; Millipore), α-SMA (1:1000, A2547; Sigma), and AFP (2 µg per mL, MAB1368; R&D Systems). The secondary antibodies used were Alexa Fluor 488- or 555-conjugated goat anti-mouse IgG (1:200; Invitrogen), Alexa 488- or 555-conjugated goat anti-rabbit IgG (1:200; Invitrogen), and Alexa 488- or 555-conjugated donkey anti-goat IgG (1:200; Invitrogen). Nuclei were stained with the 4’,6-diamidino-2-phenylindole (DAPI) contained in the VectaShield set (Vector Laboratories). The samples were analyzed in randomly selected images with BZ-X710 (Keyence, Osaka, Japan).
+ Open protocol
+ Expand
10

Surface Marker Identification of Stem Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were harvested using 0.05% trypsin-EDTA, centrifuged at 200× g for 5 min, and incubated at room temperature with 5 µL of anti-CD29 (Abcam), -CD90 (eBioscience, Altrincham, UK), -CD105 (AbD Serotec, Altrincham, UK) or -SSEA4 (eBioscience, Altrincham, UK) fluorescently-conjugated antibodies for 30 min. Cells were washed and stored on ice in the dark until analysis using a Beckman Coulter FC500 flow cytometer (Beckman Coulter, High Wycombe, UK). Each surface marker was analysed in triplicates, and the experiment was repeated three times with 50,000 events recorded for each measurement.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!