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Seramir

Manufactured by System Biosciences
Sourced in China

SeraMir is a kit designed for the isolation and purification of extracellular vesicles (EVs) from serum or plasma samples. The kit utilizes a proprietary technology to selectively capture and extract EVs from biological fluids.

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6 protocols using seramir

1

Quantification of miR-214 and CaMKII mRNA

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miR-214 and CaMKII mRNA levels were determined by using quantitative RT-PCR as previously reported [36 (link), 37 (link)]. Briefly, total RNA was extracted from the exosomes by SeraMir (System Biosciences) following the manufacturer's instructions, and cell RNA was extracted by an RNAprep pure Cell/Bacteria kit (Tiangen, Beijing, China). miR-214 levels were quantified with a stem-loop real-time PCR miR kit (RiboBio, China). The miR primer was also purchased from RiboBio (China). The purity of the isolated RNA was determined by the OD260/280 ratio using a Nanodrop ND-1000 spectrophotometer (Thermo Scientific). Isolated RNAs were reverse transcribed using a PrimeScript RT Reagent kit (TaKaRa, Kusatsu, Shiga, Japan). cDNA was used for quantitative PCR on a Bio-Rad Real-Time PCR system (Bio-Rad, Hercules, CA, USA) using a SYBR kit (Bio-Rad, USA). Amplification was performed at 95°C for 5 min, followed by 40 cycles of 95°C for 10 s, and 55.7°C for 30 s. The difference in the expression levels between the treatments was then calculated using the following equation: relative gene expression = 2 − (ΔCt, sample − ΔCt, control). U6 and β-actin were used as internal controls for miR-21 and CaMKII mRNA quantitation, respectively.
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2

Exosomal RNA Extraction and qRT-PCR Analysis

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Total RNA was extracted from exosomes by SeraMir (System Biosciences) following the manufacturer's instructions and cellular RNA was extracted using the RNAprep pure cell/bacteria kit (TIANGEN, Beijing, China). The purity of the isolated RNA was determined at OD260/280 using a Nanodrop ND-1000 (Thermo Scientific), and integrity was assessed by 1% agarose gel electrophoresis. RNAs were reverse-transcribed to first-strand cDNA using the PrimeScipt RT Reagent Kit (TaKaRa, Dalian, China). The cDNA was subjected to qRT-PCR using the SYBR kit (TaKaRa, Dalian, China). miR-128-3p expression was quantified with a stem-loop real-time PCR miRNA kit (Ribobio, Guangzhou, China). The threshold cycle (Ct) was determined for each reaction using the 2−ΔΔCt method, and the expression of each gene of interest was normalized to that of the endogenous control gene (U6 for miRNAs or GAPDH for mRNAs). The primer sequences in the study are shown in Supplementary Table 1.
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3

Isolation and Characterization of Extracellular Vesicle RNA

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Total cellular RNA was isolated using TRIzol (Thermo Fisher Scientific, Inc.). For isolation of EV-RNA, cells were cultured in monoculture or 2D co-culture. After 48 h, the media was removed and centrifuged at 3,000 × g for 15 min, EVs were isolated using ExoQuick-TC (System Biosciences, LLC) and EV-RNA was isolated using SeraMir (Systems Biosciences, LLC). The final concentration of the cellular RNA or EV-RNA was measured using a NanoDrop 2000c Spectrophotometer (Thermo Fisher Scientific, Inc.). RNA sequencing was performed by Exiqon (Qiagen Sciences, Inc.).
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4

RNA Extraction and RT-qPCR Analysis of EVs

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Total RNA was extracted from EVs using SeraMir (System Biosciences, Mountain View, CA, United States), and total RNA was extracted from cells using TRIzol reagent (Invitrogen). The concentration and purity of RNA were determined by UV spectrophotometer. Then, 1 μg total RNA was reverse transcribed into cDNA using High Capacity cDNA reverse transcription kit (Applied Biosystems, Inc., Carlsbad, CA, United States). RT-qPCR was performed using Fast Start Universal SYBR Green Master (Roche Applied Science, Mannheim GmbH, Penzberg, Germany). Relative expression of genes was examined by 2–ΔΔCt method, with GAPDH or U6 as the internal reference. The primer sequence was synthesized by GenePharma (Table 1).
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5

Plasma Exosome miRNA Expression Analysis

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Plasma exosome RNA was purified using SeraMir (System Biosciences). Isolated miRNA was reverse transcribed for qRT-PCR using the TaqMan miRNA Reverse Transcription Kit and miRNA-specific stem-loop primers (Applied BioSystems). MiRNA from stressed, control, stress + prazosin, and control + prazosin rats were analyzed for changes in miR-142-5p, miR-150, miR-155, and miR-203. Analysis was performed on the reverse transcript from 1.2 ng RNA. All real time qPCR analysis was performed in a 96-well plate (Bio-Rad) on the CFX96 (Bio-Rad) with TaqMan probes. Samples were run at a 95°C melting step for 15 sec and 60°C annealing and elongation step for 60 sec for 40 cycles. Samples were normalized to miR-191 as a stable endogenous control. Ct values were obtained using CFX manager 2.0 (Bio-Rad) and all fell within the limit of detection. Data were deconvoluted using the ΔΔCt method with samples normalized from RNA of exosomes isolated from control rats.
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6

Exosomal miRNA Profiling by qRT-PCR

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Total RNA from exosomes were extracted by SeraMir (System Biosciences) following the manufacturer's instructions, cell RNAs extracted by RNAprep pure cell/bacteria Kit (TIANGEN, Beijing, China). The purity of isolated RNA was determined by OD260/280 using a Nanodrop ND-1000 (Thermo Scientific), and integrity assessed by agarose gel electrophoresis. Isolated RNAs were reverse transcription using the PrimeScipt RT Reagent Kit (TaKaRa, Kusatsu, Shiga, Japan). The cDNA was used to perform quantitative PCR on BioRad Real-Time PCR System (BioRad, Hercules, CA, USA) using the SYBR kit (BioRad, USA). Amplification was performed at 95 °C for 5 min, followed by 40 cycles of 95 °C for 10 s, 55.7 °C for 30 s. Quantification of miR-21a-5p, miR-24-3p, miR-195a-5p, miR-132, miR-214 and miR-210 and so on were performed with a stem-loop real-time PCR miRNA kit (Ribobio, Guangzhou, China). miRNA primer also subscribed from Ribobio company (Guangzhou, China). Fold-induction was calculated using the Ct method: ΔΔCt=(CtTarget miRNA−CtU6) H2O2 induced exosomes—(CtTarget miRNA−CtU6) normal exosomes, and the final data were derived from 2−ΔΔCt.
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