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3 protocols using anti pan cytokeratin

1

Immunostaining of Circulating Tumor Cells

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Cells were immunostained with primary antibodies at room temperature for 30 min following fixation and permeabilization with 4% paraformaldehyde (PFA) (Cat No. 09154-85, Nacalai-Tesque, Kyoto, Japan) and 0.15% Triton X-100, (Cat No. 93343-100ML, Sigma) respectively. Primary antibodies used were anti-CD45 (Cat No.304002, 1:100 or 304032, 3:100; BioLegend, San Diego, CA), anti-CD45 conjugated with Brilliant Violet 421 (304032, 3:100; BioLegend), anti-EpCAM (ab7504, 1:100; Abcam), anti-CD133 (130-090-422, 1:20; Miltenyi Biotec), anti-vimentin (ab45939, 1:200; Abcam, Cambridge, UK), anti-pan-cytokeratin (628602, 1:100; BioLegend), anti-cytokeratin 19 (628502, 1:100; BioLegend), and anti-CEA (M707229, 1:50; Dako Corp., Carpenteria, CA). For signal amplification, secondary antibodies (A21422, A21235, A11046, A21245, 1:200; Invitrogen, Carlsbad, CA) or a labeling kit (Z25005, Invitrogen) were used. Nuclear DNA was stained with SYTOX Blue (Molecular Probes, Eugene, OR) to confirm the viability of the CTCs. Cell surface markers were immunostained before fixation.
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2

Identification and Characterization of Circulating Tumor Cells

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CTCs were assessed by immunofluorescence staining. The following antibodies were used to identify CTCs and assess EPCAM and TROP-2 staining as indicated in the figure legends: Anti-CD45 (BioLegend Cat# 304018, RRID:AB_389336), Anti-CD34 (BioLegend Cat# 343508, RRID:AB_1877133), Anti-CD11B (BioLegend Cat# 101218, RRID:AB_389327), Anti-CD66B (BioLegend Cat# 305109, RRID:AB_2563170), Anti-Pan cytokeratin (BioLegend Cat# 628602, RRID:AB_439775 or Abcam Cat# ab49779, RRID:AB_869395), Anti-Androgen Receptor (Cell Signaling Technology Cat# 5153S, RRID:AB_10692774), Anti-EPCAM (Abcam Cat# ab112068, RRID:AB_10861805) or Anti-TROP-2 (BD Biosciences Cat# 940370, RRID:AB_2876239) and Hoechst 33342 (Thermo Fisher Scientific). Extracellular antibodies were stained at 4°C for 30 minutes. For intracellular and nuclear staining of cells (Fig. 2), cells were stained as described by Sperger and colleagues (30 (link)). For intracellular staining (Fig. 4), cells were permeabilized, stained, and washed with BD Perm/Wash. Images were taken with a 10x objective using Nikon Eclipse Ti-E with an ORCA-Flash 4.0 V2 Digital CMOS camera (Hamamatsu) and NIS-Elements AR Microscope Imaging Software (RRID:SCR_014329, Nikon Instruments). Images were background subtracted, and CTCs were determined by Hoechst-positive staining, cytokeratin+ and CD45/CD34/CD66b.
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3

Characterization of Fibroblast Phenotypes

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5000 fibroblasts were seeded per well in a 96 well plate in DMEM/10% FBS overnight. Cells were fixed in 10% neutral formalin buffer for 24 hours, permeabilized in methanol for 10 minutes at -20°C and blocked in PBS containing 3% FBS for 1 hour. Cells were then incubated with the following antibodies (1:100) for 24 hours in blocking buffer: anti-PDGFR-α (Cell Signaling Technology, cat no.5241), anti-FSP1 (Abcam, cat no. ab75550), α-SMA (Abcam cat no. 7817), anti-VEGFR2 (Santa Cruz Biotechnology, cat no.sc-393163) and anti-Pan-Cytokeratin (Biolegend, cat no.628602). Cells were washed in PBS 3 times and incubated with the following secondary antibodies (1:1000): anti-rabbit-biotinylated (Jackson Laboratories, cat no.111-065) to detect PDGFR-α or anti-mouse-biotinylated (Vector Laboratories, cat no.BA-9200) to detect VEGFR2, α-SMA or Pan-Cytokeratin. Biotinylated antibodies were incubated with streptavidin bound to horseradish peroxidase (HRP) (Vector Laboratories, cat no. SK4100) for 30 minutes. FSP1 was detected using secondary anti-rabbit-HRP (1:500, Avantor, cat no. 10150-732). Protein expression was detected through HRP reaction to 3, 3 -diaminobenzidine substrate (Vector Laboratories, cat no.SK4100).
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