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4 protocols using clarity ecl detection kit

1

Protein Expression Analysis by Western Blotting

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Cells were pelleted and lysed using RIPA buffer (10 mM Tris-Cl (pH 8.0), 1 mM EDTA, 1% Triton X-100, 0.1% sodium deoxycholate, 0.1% SDS, 140 mM NaCl, 1 mM PMSF). Lysates were sonicated and protein concentration was determined using BCA protein assay (Sigma). 30 μg of total proteins were loaded on 12% SDS–PAGE gel and separated by electrophoresis. Protein were transferred on PVDF membrane, dried and blotted overnight in 5% BSA TBS-T at 4 °C using primary antibodies (Abcam anti-SMARCD3: ab171075; Santa Cruz anti-beta-Actin (C-4): sc-47778; Millipore anti-γH2AX (Ser139): 05–636; Cell Signaling anti- p21WAF1/CIP1 (12D1): 2947). Afterwards, membranes were incubated with secondary antibodies for one hour at room temperature and developed using Clarity ECL Detection Kit (Bio-Rad).
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2

Western Blot Analysis of Akt Phosphorylation

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Cell protein samples were obtained via cell lysis in a sample buffer (62.5 mM Tris-HCl pH 6.8, 2.5% SDS, 0.002% Bromophenol Blue, 5% β-mercaptoethanol, 10% glycerol). Proteins were divided by the SDS-PAGE method. Afterward, proteins were transferred from polyacrylamide gel to the PVDF membrane by Western blotting. TBS containing 0.1% Tween-20 and 5% BSA (PanEco, Moscow, Russia) was used to prevent non-specific binding. The next step was overnight staining of the membrane with protein-specific antibodies to phosphorylated T308 Akt [Anti p-Akt (Thr308) (244F9) Rabbit mAb #4056; Cell Signaling Technology Inc., Danvers, MA, United States] and Vinculin (Anti Vinculin Rabbit antibody V4139; Sigma-Aldrich). Unbound antibodies were then washed away, and the rest were incubated with antibodies for total rabbit immunoglobulins conjugated with peroxidase (P-GAR Iss; IMTEK, Moscow, Russia) for 1 h. Amplified chemiluminescence was used as a visualization method with a Clarity ECL detection kit (Bio-Rad). Image registration was carried out using the ChemiDoc Touch gel documenting system (Bio-Rad). Image analysis and volume measurements were performed using the Image Lab Software (Bio-Rad). Total Akt staining volume readings were normalized to the respective vinculin level, and then volume readings for p-Akt were compared with respective normalized Akt.
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3

Western Blot Analysis of Cell Lysates

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Treated cells were lysed in sodium dodecyl sulfate (SDS) lysis buffer [0.5 M Tris-HCl pH 6.8, 2% SDS (w/v) and 10% glycerol (v/v)] and heated at 95 °C for 10 minutes. The cell lysate was then centrifuged at 10,000 x g for 15 min at 4 °C, after which the supernatant was collected and the protein was determined using a BCA protein assay kit (Pierce Biotechnology, Illinois, USA). Cell lysate (total protein of 25–35 µg) from each treated condition was resolved on SDS polyacrylamide gels under reducing conditions and electrotransferred onto a PVDF membrane (Pall Corporation, New York, USA). After blocking with 5% non-fat milk in Tris buffer saline (TBS) containing 0.05% Tween-20 (TBS-T), the membrane was incubated with primary antibodies for 1 hour at room temperature. Bound antibodies were then detected with horseradish peroxidase (HRP)-conjugated goat anti-mouse IgGs for 1 hour. After extensive washing, immunoreactive protein was visualized with a chemiluminescence-based procedure using the Clarity ECL detection kit (Biorad Laboratories, California, USA) and x-ray film (Kodak, New York, USA)
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4

Western Blot Protein Analysis Protocol

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Cells were lysed using Mammalian Protein Extraction Reagent (M-PER™, ThermoFisher Scientific), supplemented with 1× Halt™ Protease and Phosphatase Inhibitor Cocktail (ThermoFisher Scientific).
Samples were diluted 3:1 with 4× Laemmli sample buffer (Bio-Rad, Hertfordshire, UK) and in 10% 2-mercaptoethanol (Sigma-Aldrich, St. Louis, MO, USA) at 95 °C for 5 min to denature proteins. Samples were then electrophoresed on a polyacrylamide gel at 120 V for up to 90 min in a buffer consisting of 3.028 g Tris, 14.41 g Glycine and 1 g sodium dodecyl sulphate (SDS) in 1 L dH2O. The gel was then transferred onto a nitrocellulose membrane (GE Healthcare, Buckinghamshire, UK) in a buffer consisting of: 3.03 g tris, 14.41 g glycine, 200 mL methanol, 800 mL H2O, for 20 h, 15 V at 4 °C.
Membranes were blocked for 1 h at room temperature in 5% (w/v) dried milk diluted in blot rinse buffer (BRB, 1.21 g Tris, 8.8 g NaCl, 0.327 g EDTA, 1 mL Tween20, in 1 L dH2O). Membranes were then incubated with a primary antibody (Table S2: Primary antibodies) overnight at 4 °C and were then washed in BRB. Secondary antibody was added for 1 h at room temperature (anti-mouse-HRP, Sigma-Aldrich, A4416, 1:5000), followed by subsequent washes in BRB. Finally, Clarity™ ECL detection kit (Bio-Rad) was applied for 5 min, before exposure with photographic film (ThermoFisher Scientific).
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