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Hypercarb cartridge

Manufactured by Thermo Fisher Scientific

The Hypercarb cartridge is a chromatography column product designed for liquid chromatography (LC) applications. It features a porous graphitic carbon stationary phase that can be used for the separation and analysis of a wide range of analytes, including polar, non-polar, and ionizable compounds. The Hypercarb cartridge provides high-performance separations and is compatible with a variety of sample types and mobile phase conditions.

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4 protocols using hypercarb cartridge

1

Sodium Hypochlorite Purification and Characterization

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All chemicals and HPLC solvents were purchased from Sigma-Aldrich,
Acros, Oakwood chemicals, and Fisher Scientific. Potentially, any commercial
source of NaClO, including local markets, may be used, but should be compared to
NaClO from a chemical supplier for validation. Milli-Q water was used to prepare
all aqueous solutions. Sodium hypochlorite solutions are from Clorox (6.15%
NaClO), Pure Bright (6% NaClO), Up & up (8.25% NaClO) or Sigma-Aldrich (5%
chlorine) and prepared freshly by addition of water. Bleach stored for more than
6 months under room temperature as 6% NaClO has been used successfully. Pd/C:
10%Palladium on C (Sigma-Aldrich). C18 Sep-pak (Waters); Hypercarb cartridge
(Thermo Scientific).
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2

Sodium Hypochlorite Purification and Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
All chemicals and HPLC solvents were purchased from Sigma-Aldrich,
Acros, Oakwood chemicals, and Fisher Scientific. Potentially, any commercial
source of NaClO, including local markets, may be used, but should be compared to
NaClO from a chemical supplier for validation. Milli-Q water was used to prepare
all aqueous solutions. Sodium hypochlorite solutions are from Clorox (6.15%
NaClO), Pure Bright (6% NaClO), Up & up (8.25% NaClO) or Sigma-Aldrich (5%
chlorine) and prepared freshly by addition of water. Bleach stored for more than
6 months under room temperature as 6% NaClO has been used successfully. Pd/C:
10%Palladium on C (Sigma-Aldrich). C18 Sep-pak (Waters); Hypercarb cartridge
(Thermo Scientific).
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3

Sialic Acid and Fucose Removal from Mucin Glycans

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1 mg of mucin glycans per 400 uL 1 M TFA were incubated at 80°C for 4 hours to remove sialic acid and fucose. Glycans were then dried using a speedvac, and washed repeatedly with methanol until all TFA was removed, as verified by pH testing.
For samples further purified through Hypercarb cartridges (ThermoFisher), acid-treated glycans were first neutralized with potassium hydroxide (KOH), incubated at room temperature for 10 minutes to allow salts to precipitate, and then spun at 16,000 g for 10 minutes to remove any precipitant. The supernatant was then collected and dried using a speedvac. At the same time, the Hypercarb cartridges were first primed with 4 column volumes of 100% acetonitrile, then flushed with 4 column volumes of water. The 1 mg of dried TFA-treated glycans were resuspended in 500 μL of water, and loaded onto the cartridge. The Hypercarb cartridge was then washed with 2 column volumes of water and 1 column volume of 2% acetonitrile to remove salts and monosaccharides. Glycans were then eluted using 2 column volumes of 50% acetonitrile, and dried using a speedvac.
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4

Purification and Analysis of Transferrin Glycans

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IAC purified mTf or mTf standard (25 g) was reduced with 0.5% 2-mercaptoethanol ( -ME) and 0.5% SDS in 50 mM NH 4 HCO 3 (pH 7.6-7.7) and heated in a thermo block at 100 ºC for 30 min [19] . Once the sample was at room temperature, a volume of 50 mM NH 4 HCO 3 (pH 7.6-7.7) with 1% (v/v) of NP-40 alternative was added to obtain a final concentration of 0.1% SDS and -ME in the sample. To release the N-glycans, 1 L of PNGase F (1 U) solution was added to the mixture, which was afterwards incubated at 37ºC for 18 h. Digestion was stopped by heating the sample in a thermo block at 100ºC for 5 min. Then, released glycans were isolated by solid phase extraction (SPE) using Hypercarb cartridges (25 mg, 1 mL volume, Thermo Fisher Scientific) and, subsequently, purified by ice-cold acetone precipitation following the procedure reported in [19] in both cases. Reduced glycans were diluted with 50:50 H 2 O/ACN with 0.1% FA and directly analyzed by IM-MS in negative ion mode. All the experiments with the standard glycoprotein were carried out in triplicate. Mice derived transferrin glycan analysis was carried out in duplicate, including purification and release of glycans.
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