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14 protocols using sw1990

1

Culturing Pancreatic Cancer Cells in MRC-5 Conditioned Medium

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Cancer-associated fibroblast MRC-5 was donated by Dr. Xi, Chen (Zhejiang University, China). SW1990 and PANC-1 cell lines were purchased from Shanghai Cell Bank, Chinese Academy of Sciences. MRC-5 cells were maintained in Dulbecco's modified Eagle's medium (DMEM) (Gibco, Grand Island, NY, USA) supplemented with 10% heat-inactivated fetal bovine serum (Sigma-Aldrich, St. Louis, MO, USA) at 37°C in a 5% CO2 water-saturated environment. Conditioned medium of MRC-5 cells (MRC-5-CM) was collected as previously described 43 (link). DMEM medium supplemented with 10% FBS serverd as the control medium. SW1990 and PANC-1 cells were respectively incubated in the MRC-5-CM for 14 days (n=3). SW1990 was subcultured once a week at a ratio of 1:3 or 1:5. MRC-5 and PANC-1 were subcultured once a week at a ratio of 1:1 or 1:2. 20ml MRC-5-CM was used when Pancreatic cancer cells were cultured in 75cm2 cell culture flasks.
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2

Pancreatic Cancer Cell Line Transfection

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Human PC cell lines (SW1990, PANC-1, BXPC-3, AsPc-1, and Capan-1) and human pancreatic duct epithelial cell line (H6C7) were obtained from the Shanghai Cell Bank of Chinese Academy of Sciences (Shanghai, China). Cells were cultured in Dulbecco's modified Eagle's medium (DMEM, Invitrogen, Carlsbad, CA, United States) supplemented with 10% fatal bovine serum (FBS, Invitrogen), 100 U/mL penicillin, and 100 μg/mL streptomycin (Hyclone, South Logan, UT, United States) in a humidified incubator (5% CO2) at 37 °C. Small interfering RNAs (siRNAs) targeting TP73-AS1 (si-TP73-AS1#1, si-TP73-AS1#2, and si-TP73-AS1#3) and negative control (si-control) were purchased from GenePharma (Shanghai, China). MiR-128-3p, miR-NC, anti-miR-128-3p, and anti-miR-NC were obtained from Thermofisher. Cell transfection was performed using FuGENE HD Transfection Reagent (Roche, United States) according to the manufacturer’s instructions.
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3

PDAC Cohort and Cell Line Culture

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We collected a cohort of 64 paraffin-embedded specimens from patients with resectable primary PDAC who underwent pancreaticoduodenectomy at Nanfang Hospital, Southern Medical University from 2016 to 2018. Prior patient consent and approval were obtained from the Institutional Research Ethics Committee. PDAC cell lines, including SW1990, PANC-1, BXPC-3, and CFPAC-1, and the normal human pancreatic duct epithelium cell line HPDE6-c7 were provided by Shanghai Cell Bank (Chinese Academy of Sciences, Shanghai, China). All cell lines (8 × 105 cells/plate) were seeded in Dulbecco’s modified Eagle’s medium (DMEM) (HyClone, Logan, UT, USA) with 10% fetal bovine serum (FBS, Gibco, Brazil) at 37°C in a 5% CO2 incubator.
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4

Culturing Pancreatic Adenocarcinoma Cell Lines

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The human pancreatic adenocarcinoma cell lines PANC1, AsPC1 and SW1990 were purchased from Shanghai Cell Bank of Chinese Academy of Sciences. All the cell lines were cultured in Dulbecco's Modified Eagle's medium (DMEM) supplemented with 10% fetal bovine serum (Gibco, USA), 100 U/mL penicillin (Gibco, USA) and 100 mg/mL streptomycin (Gibco, USA) at 37 °C in a humidified atmosphere containing 5% CO2.
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5

Establishing Pancreatic Cancer Cell Lines

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Six human pancreatic cancer cell lines (BxPC-3, CFPAC-1, Colo-357, MiaPaCa-2, PANC-1, and SW1990) were purchased from the Shanghai Cell Bank (Shanghai, China). The normal human pancreatic ductal cell line, HPNE, was purchased from the American Type Culture Collection (ATCC, USA). Cell lines that stably overexpress YY1 (BxPC-3 and PANC-1), cell lines in which YY1 is knocked down, and control cell lines were prepared and cultured as previously described [20 (link)]. Human pancreatic cancer cell lines were cultured in DMEM supplemented with 10% FBS, penicillin (100 U/mL), and streptomycin (100 μg/mL). The HPNE cell line was cultured according to the recommendations of the ATCC.
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6

Establishing Pancreatic Cell Line Model

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A normal pancreatic duct epithelial cell line, HPDE6-C7, and five pancreatic cancer cell lines (BXPC3, SW1990, PANC-1, CAPAN-1, and ASPC-1) were acquired from the Shanghai Cell Bank (Shanghai, China). Cells were maintained in Dulbecco’s modified Eagle’s medium (DMEM, Invitrogen) containing 10% fetal bovine serum (FBS, Hyclone, Logan, UT, USA) and antibiotics in tissue culture incubators.
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7

Culturing PANC-1 and SW1990 PC Cell Lines

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The human PC cell lines PANC-1 and SW1990 were purchased from Shanghai Cell Bank (Shanghai, China). Both cell types were cultured in Dulbecco’s Modified Eagle Media (DMEM) medium supplemented with 10% fetal bovine serum, 1% penicillin and streptomycin, and grown in a humidified incubator at 37 °C with 5% CO2. All tissue culture reagents and atorvastatin were purchased from Sigma-Aldrich (St. Louis, MO, USA).
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8

Investigating lncRNA Knockdown in PC Cells

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Human PC cell lines (SW1990, BxPC-3 and) were obtained from the Shanghai Cell Bank (Shanghai, China). The SW1990, BxPC-3 and Panc-1 cell lines were cultured in Dulbecco's modied Eagle's medium (DMEM) or RPMI-1640 supplemented with 10% fetal bovine serum (FBS), 100 U/ml penicillin and 0.1 mg/ml streptomycin, in an incubator at 37°C with 5% CO2 atmosphere. Small interference RNA (siRNA) for the knockdown of lncRNA and negative control siRNA were constructed by GenePharma (Shanghai, China). Transfection was performed using Lipofectamine 2000 (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s instructions. The primers of siRNA target used in this study were as follows: siRNA-1: 5′-TGGTGGAGCCTAAAGACCTGAGGAT-3′; siRNA-2:5′GCTGCAGCAGAACACGAATATCAAT-3′; siRNA-3: 50027-GAGCCCGGCTCACATAATCAGCAAA-3′; si-NC: 5'-TGGGAGTCCAAACAGGTCGATGGA-3′. Complementary DNA encoding ENSG00000254041.1 was synthesized and subcloned into the pcDNA3.1(+) vector (Invitrogen) according to the manufacturer’s instructions. Transfections were performed using Lipofectamine 3000 and OPTI-MEM (Invitrogen) according to the manufacturer’s instructions. Cells transfected with scramble siRNA (siNC) or infected with blank pcDNA3.1(+) vector (blank vector) were used as negative controls.
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9

Culturing Pancreatic Cell Lines

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HEK293T, HPDE pancreatic duct epithelial cell line and human PAAD cell lines (AsPC-1, BXPC3, CFPAC1, PANC-1, and SW1990) cells were obtained from the Shanghai Cell Bank. Cells were cultured in DMEM media supplemented with 10% fetal bovine serum (FBS), 100 units/mL penicillin and 100 μg/mL streptomycin.
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10

Culturing Pancreatic Cell Lines

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Human normal pancreatic duct epithelial cell HPDE6-C7, and pancreatic cancer cell lines PANC-1, SW1990, AsPC-1 and BxPC-3 were purchased from Shanghai Cell Bank (Shanghai, China). DMEM medium (11,965,084, Gibco, Waltham, MA, USA) containing 10% fetal bovine serum (FBS, 10,099,141, Gibco) and 1% penicillin-streptomycin (15,070,063, Gibco) was used to culture cells in a humidified atmosphere at 37°C with 5% CO2 [14 (link)].
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