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10 protocols using r geco1

1

Engineering Fluorescent Protein Variants

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R-GECO1, R-GECO1.2, RCaMP1h, and jRCaMP1a/b were purchased from Addgene (addgene clones: # 32444, 45494, #32444, #42874, respectively). Point mutations were introduced by PCR, saturating position I78 (equivalent to T203 in GFP) by all other amino acids: I78L, I78T, I78N, I78H, I78A, I78Y, I78Q, I78P, I78C, I78K, I78G, I78F, I78D, I78E, I78S, I78R, I78V, I78W (see list of primers at Supplementary Table 1). PCR reactions were carried out with the use of Pfu polymerase (Promega, United States), at annealing temperatures of 60°C (1:30 min); extension at 68 °C (15 min). RCaMP1h was removed from its original bacterial expression vector using standard PCR reaction and inserted into a mammalian expression vector.
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2

Fluorescent Calcium Sensors in Parasites

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Transient transfections of HeLa cells were performed using PolyJet purchased from SignaGen (http://signagen.com/). Plasmids for GCaMP6f (fast version of GCaMP6), R-GECO1.2, jGCaMP7f, and LAR-GECO1.2 were obtained from Addgene, and the plasmids were used for transient transfection in HeLa cells. The respective genes were cloned into the T. gondii expression vector pCTH3 and pDHFRTubGFP for chloramphenicol and selection-less stable expression of GCaMP6f in tachyzoites, respectively. Thapsigargin, ionomycin, saponin, histamine, Zaprinast, and all other chemicals were obtained from Sigma. All plasmids used in this work are shown in Table S3.
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3

Cloning of Fluorescent Calcium Indicators

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For REX-GECO1 plasmid with a CMV promoter, template (REX-GECO1 in pTorPE11 (link)) was cloned into a modified pcDNA3 plasmid by PCR as previously described10 (link). This vector was used in one-photon, two-photon imaging of HeLa cells and one-photon imaging of dissociated rat hippocampal neurons. For REX-GECO1 plasmid with a human synapsin I promoter, template (REX-GECO1 in pTorPE) was cloned into an AAV2 plasmid flanked by restriction sites BamH1 and HindIII by PCR using following primers: BamH1_fw (5′-GAGGATCCACCATGGTCGACTCATCACGTC-3′) and HindIII_rv (5′-GCGATGAAGCTTCTACTTCGCTGTCATCATTTGTACAAACTCTTCGTAGTTT-3′). For iGluSnFR plasmid with a human synapsin I promoter, iGluSnFR (Addgene plasmid 41732) was used as a template and cloned into an AAV2 plasmid flanked by restriction sites BamH1 and HindIII by PCR using following primers: BamH1_iGlu_fw (5′-CGAGGATCCGCCACCATGGAGACAGACACACTCCTGCTATGGGTAC-3′) and HindIII_iGlu_rv (5′-CCCTTATCATCCTCATCATGCTTTGGCAGAAGAAGCCACGTTAGAAGCTTCGATCC-3′). For GCaMP6s R-GECO1 and RCaMP1h plasmid (with a human synapsin I promoter) used in comparison with REX-GECO1 in rat hippocampal organotypic brain slices, GCaMP6s (Addgene plasmid 40753), R-GECO1 and RCaMP1h (Addgene plasmid 42874) were used as a template and cloned into the same AAV2 plasmid, respectively.
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4

Calcium Signaling Dynamics in Mast Cells

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RBL-2H3 mast cells were maintained in monolayer culture through weekly passage as described previously [10 (link)]. For stimulation, cells were sensitized with 1 μg/ml anti-DNP IgE for 4-24 hours. COS-7 cells were maintained in culture as previously described [11 (link)].
The genetically encoded Ca2+ indicators GCaMP3 [12 (link)] and R-geco1 [13 (link)] were purchased from Addgene (plasmid #22692 and plasmid #32444 respectively). Plasmids containing AcGFP-Orai1, STIM1-mRFP [14 (link)], YFP-STIM1, and mRFP-STIM1 or their untagged versions [15 (link)] were previously described. For transfection, cells were sparsely plated (1-3 × 105/ml) in six well plates for fluorimetry experiments, or on # 1.5 coverslips or in 35 mm glass bottom dishes (MatTek Corp.) for confocal imaging. After overnight culture, cells were transfected using 1-1.5 μg DNA and 2 μl Lipofectamine 2000 in 1 ml OptiMEM per well for 3-4 hr for COS-7 cells, or 2-2.5 μg DNA and 10 μl FuGENE HD (Promega) in 1 ml OptiMEM per well for 3-4 hr in the presence of 1 ng/ml phorbol 12,13-dibutyrate to enhance DNA uptake for RBL-2H3 cells [10 (link)]. Samples were then washed into full media and cultured for 16-24 hours to allow for protein expression.
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5

Live-Cell Imaging of Calcium Oscillations

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Live-cell imaging was performed with cells plated on glass coverslips. Fura-2 or Indo-1 were loaded as acetoxymethyl esters for 20–40 min. RGECO1 (Addgene) or IRIS-1 (gift of K. Mikoshiba, RIKEN Brain Science Institute) were cotransfected with the LBD constructs as required. The cells were incubated in HEPES-buffered physiological saline solution in a microscope chamber maintained at 37°C. Properties of [Ca2+]i oscillations and waves were determined as described previously (Hajnóczky and Thomas, 1997 (link); Rooney et al., 1989 (link), 1990 (link)).
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6

Generating Engineered Protein Constructs

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Split-Rluc constructs (Mito-RlucN and RlucC-ER) have been described previously8 (link). R-GECO1 (plasmid #46021), GCaMP6s (plasmid #100844), and Sec61 β(plasmid #15108) were obtained from Addgene (gift from Robert Campbell, Douglas Kim & GENIE Project, and Tom Rapoport, respectively). CRE-luc2P (pGL4.29) used for CRE reporter gene assay was purchased from Promega. Plasmids expressing Gs CA (Q227L), Gq CA (Q209L), Gi CA (Q205L), RAP1A DN (S17N), and EPAC2 DN (R432K)26 (link),48 (link)–50 (link) were generated by cloning PCR-amplified cDNA fragments into pCAG-IRES-GFP (pCIG) vector (EcoRI/MluI). For the plasmid encoding β2-AR was generated by cloning PCR-amplified cDNA fragment into pCDH-EF1a-MCS-PGK-puro vector (EcoRI/NotI). For these cloning, HEK293T cDNAs, as a template, and specific primer sets including the ones containing mutations (see Table S5 for primer sequences) were used for PCR.
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7

Live-Cell Imaging of Calcium Oscillations

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Live-cell imaging was performed with cells plated on glass coverslips. Fura-2 or Indo-1 were loaded as acetoxymethyl esters for 20–40 min. RGECO1 (Addgene) or IRIS-1 (gift of K. Mikoshiba, RIKEN Brain Science Institute) were cotransfected with the LBD constructs as required. The cells were incubated in HEPES-buffered physiological saline solution in a microscope chamber maintained at 37°C. Properties of [Ca2+]i oscillations and waves were determined as described previously (Hajnóczky and Thomas, 1997 (link); Rooney et al., 1989 (link), 1990 (link)).
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8

Adenoviral-mediated Expression of hV1BR and R-GECO1

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Adenoviruses were prepared using the Gateway cloning system (Thermo Fisher Scientific). The coding sequence of the human V1b receptor together with a Strep-tag II tag was sub-cloned into the Gateway vector pENTR1A. The insulin promoter sequence RIP1 was inserted before the hV1BR coding sequence to ensure the expression in a beta cell-specific manner. Similarly, the gene encoding for the red calcium indicator R-GECO1 [27 (link)] (Addgene) was preceded by the RIP1 promoter and sub-cloned into pENTR1A. The resulting vectors pENTR1A-RIP1-hV1BR and pENTR1A-RIP1-R-GECO1 were sequenced and subjected to recombination with the promoter-less destination vector pAd/PL-DEST, for the production of adenoviruses using HEK293A cells. Adenoviruses were purified and concentrated using Fast-Trap (Millipore), following the manufacturer's instructions. Quantification was performed by real-time PCR on a QuantStudio 5 system (Thermo Fisher Scientific), using SYBR Green (Thermo Fisher Scientific) and primers specific for the adenovirus coding sequence. Transduction was performed by infecting cells with serum-supplemented culture medium containing 1000 viral particles per μl.
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9

Visualizing Phosphoinositide Dynamics

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All salts were from Sigma-Aldrich. PAO was from Sigma-Aldrich, and wortmannin and PIK93 were from TOCRIS Bioscience. The following plasmids were used: GFP-PH-OSBP (Balla et al., 2005 (link); gift from Tamas Balla, National Institutes of Health, Bethesda, MD), GFP-PHx2-OSH2 (Stefan et al., 2011 (link); plasmid 36095; Addgene), GFP-P4M-SidM (Hammond et al., 2014 (link); plasmid 51472; Addgene), mRFP-PH-PLCδ1, mRFP-PH-Akt, GFP-Sac2 (Nakatsu et al., 2015 (link); gift from Pietro DeCamilli, Yale University, New Haven, CT), GFP-Rab27a, GFP-Rab3a, NPY-GFP, NPY-mCherry, VAMP2-pHluorin (all gifts from Sebastian Barg, Uppsala University, Uppsala, Sweden), Lamp1-RFP (Sherer et al., 2003 (link); plasmid 1817; Addgene), GFP-Rab5, GFP-EEA1 (gifts from Pietro DeCamilli), CIBN-CAAX (Idevall-Hagren et al., 2012 (link)), GFP-CRY2-5ptaseOCRL (Idevall-Hagren et al., 2012 (link)), GFP-CRY2-iSH2 (Idevall-Hagren et al., 2012 (link)), R-GECO1 (Zhao et al., 2011 (link); plasmid 32444; Addgene), GFP-Lact-C2 (Yeung et al., 2008 (link); plasmid 22853; Addgene), EGFP-Rab4a (Rzomp et al., 2003 (link); plasmid 49434; Addgene), GFP-Rab10 (Huckaba et al., 2011 (link); plasmid 31737; Addgene), Granuphilin-GFP (Gálvez-Santisteban et al., 2012 (link); plasmid 40032; Addgene), and GFP-2xFYVEEEA1 (Petiot et al., 2003 (link)).
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10

Calcium Signaling Assay Reagents

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Thapsigargin, phorbol 12,13-dibutyrate, C2-ceramide and C6-ceramide and C2-dihydroceramide were purchased from Sigma-Aldrich. FuGENE HD was from Promega (Madison, USA), and TransIT/Jurkat was from Mirus Corporation (Madison, USA). mAb OKT3 and mAb 4G10 were from Thermo Fisher Scientific and A488-conjugated goat anti-mouse γ2b was from Invitrogen. The genetically encoded Ca2+ indicator RGECO-1 (Zhao et al., 2011 (link)) was purchased from Addgene (plasmid #32444; Cambridge, USA). A488-CTxB was from Invitrogen and TX-100 Surfact-Amps was from Thermo Fisher Scientific.
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