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10 protocols using d110016

1

Profiling Protein Expression in NSCLC

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Whole-cell lysates were prepared from human NSCLC cell lines after harvesting and centrifuging. Protein concentrations were quantified using BCA kit (Beyotime Bio, Shanghai, China). The proteins were denatured, electrophoresed (SDS-PAGE gel Kit, Beyotime Bio, Shanghai, China), and then transferred to PVDF membranes (Millipore Co., MA, USA). Subsequently, the PVDF membranes were blocked with non-fat milk powder, incubated with primary and secondary (HRP-labeled goat anti-rabbit IgG) antibodies, and visualized (Bio-Rad Image Lab Software).
Western blotting was performed using the primary antibodies, anti-SH2B1 (1:1000, ab196575, Abcam), anti-Akt (1:600, ab8805, Abcam), anti-Akt (phospho S473) (1:300, ab8932, Abcam), anti-mTOR (1:1500, ab2732, Abcam), anti-mTOR (phosphor S2448) (1:1000, ab109268, Abcam), anti-PTEN (1:600, ab31392, Abcam), anti-C-Myc (1:1000, ab32072, Abcam), antibodies (Abcam, Cambridge, MA, USA), and anti-GAPDH antiboty (1:3000. D110016, Sangon Biotech, Shanghai, China). Following the initial western blotting assay, the membranes were stripped and the band intensities were relative to GAPDH. The quantification of protein bands was performed using Image J software.
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2

Protoplast Transformation and Chloroplast Protein Extraction

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Fifty micrograms of OsPPR676 and 50 μg of Osj10gBTF3 or OsHSP82 plasmids were co-transfected into rice protoplasts (1 × 105), which were isolated from WT, hsp82-1, or btf3-1 mutant seedlings at 12 days according to Guidelines for biological experiments in rice. The transformation was performed by 40% PEG and incubated in WI solution for 5 h. Samples were collected before 10 μm CHX was added, and at 3 h after 10 μm CHX was added, FLAG antibody (DK3201, Elabscience).
Chloroplast proteins were extracted from leaf tissues of 2-week-old WT, hsp82-1, and btf3-1 seedlings as described previously (Cho et al., 2006 (link)). Coomassie Blue staining was used as an internal loading control. The target protein, atpB, was detected by atpB antibody (AS05085, Agrisera). The nuclear protein histone and cytoplasmic protein GAPDH were detected by histone (D151717, Sangon Biotech) and GAPDH (D110016, Sangon Biotech) antibody, respectively.
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3

Antibody Sources and Cobalt Dichloride

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The primary antibodies used in this study were purchased from the following sources: anti-gemin1 (ab108424, Abcam, United Kingdom), anti-SMN (610646, BD Biosciences, United States), anti-cleaved PARP (ab194217, Abcam, United Kingdom), anti-cleaved caspase-3 (9664, CST, United States), anti-NFκB (8242, CST, United States), anti-phosphor- NFκB (3033, CST, United States), anti-IκBα (4812, CST, United States), anti-phosphor-IκBα (2859, CST, United States), and anti-GAPDH (D110016, Sangon Biotech, China). All secondary antibodies used for immunoblot analysis were from Sangon Biotech. Cobalt dichloride (CoCl2, c8661, United States) was purchased from Sigma-Aldrich.
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4

LSINCT5 Regulates CXCR4 and SDF1 Expression

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SKOV3 cells were transfected with LSINCT5-siRNAs or LSINCT5-NC, and total protein was isolated from the cells 48 h post transfection with cell lysis buffer (Beyotime Institute of Biotechnology). Protein concentrations were determined by BCA (Beyotime Institute of Biotechnology). Protein samples (40 µg) were run on an SDS-PAGE gel and then transferred to a PVDF membrane (EMD Millipore, Billerica, MA, USA). The membranes were blocked with 5% skimmed milk for 2 h and then incubated with anti-chemokine C-X-C Motif receptor 4 (CXCR4) antibody (1:600; ab124824, ABCAm, Cambridge, MA, USA) and Anti-SDF1 antibody (1:1,000; ab9797, ABCAm) at 4°C overnight. GAPDH (1:1,000, D110016; Sangon Biotech Co., Ltd., Shanghai, China) was used as the loading control. All the antibodies were diluted by specific dilution designed for western blot antibody (Boster Biological Technology, Pleasanton, CA, USA). The membrane was then incubated with secondary antibody for 2 h and visualized with Enhanced chemiluminescence (ECL) (Beyotime Institute of Biotechnology).
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5

Western Blot Analysis of YTHDC1 in AD

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Protein samples from AD and normal tissues were added to sodium dodecyl sulfate-polyacrylamide gel (15 μg sample per gel lane) to separate, and then, the protein bands were transferred to polyvinylidene fluoride membranes. The membranes were blocked, followed by incubation with rabbit anti-YTHDC1 (abs117811, Absin, Shanghai, China) and rabbit anti-GAPDH (D110016, Sangon Biotech, Shanghai, China). The blots were then incubated with goat anti-rabbit IgG which was labeled by horseradish peroxidase. Finally, the density of immunoreactive bands normalized to the signal intensity of GAPDH was determined using the Electro Chemical Luminescence Kit and ImageJ software 1.53.
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6

Exosome Protein Extraction and Analysis

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The Mixed RIPA buffer (R0010, Solarbio, Beijing, China) with phenylmethanesulfonyl fluoride (PMSF) (P0100, Solarbio) at 100:1 was used to lysis cells and exosomes. The extracted proteins were quantified using the BCA Protein Assay Kit (C503021, Sangon Biotech, Shanghai, China). The antibodies used in Western blot includes rabbit anti-human CD9 (ab263019, 1:1,000, Abcam), CD63 (ab134045, 1:2,000, Abcam), HSP70 (ab181606, 1:1,000, Abcam), TSG101 (ab125011, 1:2,000, Abcam), IRAK-1 (ab180747, 1:1,000, Abcam), TRAF-6 (ab33915, 1:2,000, Abcam), GAPDH (D110016, 1:5,000, Sangon Biotech), and horseradish peroxidase (HRP)-conjugated goat anti-rabbit IgG (D110058, Sangon Biotech). The relative expressions of the target proteins were normalized to GAPDH.
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7

Protein Expression Analysis by Western Blot

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The total protein extracted from cells were separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS–PAGE), and then transferred to a PVDF membrane. The membrane was next incubated with 5% skim milk for 2 h at 20-25°C. After being incubated with primary antibodies at 4°C for 10h and then with rabbit or mouse secondary antibodies at 20-25°C for 1h. Signals were detected using chemiluminescence reagents. The primary antibodies used were anti‐XBP1 (1:1000, ab37152, abcam), anti‐IGFBP3. (1:1000 10189-2-AP,PTGCN), anti‐Tubulin antibody (1:5000. D110016, Sangon Biotech, Shanghai, China).
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8

Western Blot Analysis of Signaling Proteins

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Western blotting was performed using the primary antibodies, anti‐SH2B1 (1:1000, ab196575, Abcam, Cambridge, MA), anti‐E‐cadherin (1:3000, ab40772, Abcam), anti‐N‐cadherin (1:1000, ab76011, Abcam), anti‐Vimentin (1:2000, ab92547,Abcam), anti‐β‐catenin (1:5000, ab32572, Abcam), anti‐TCF‐4 (1:25000, ab76151,Abcam), anti‐CyclinD1 (1:10000, ab134175, Abcam), anti‐C‐Myc (1:1000, ab32072, Abcam), anti‐IRS1 (1:1000, ab40777), anti‐DVL‐2 (1:500, ab137528), antibodies (Abcam), and anti‐GAPDH antibody (1:3000. D110016, Sangon Biotech, Shanghai, China). Following the Western blotting assay, the membranes were stripped, and the band intensities were relative to GAPDH. The quantification of protein bands was performed using ImageJ software.
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9

Western Blot Analysis of Chondrocyte Markers

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Cells were transfected with the circ_0075062 interference plasmid using Lipofectamine 2000 (Invitrogen, Carlsbad, CA, USA), according to the manufacturer's protocol. Then, transfected cells were collected for western blotting analysis after 24 h of glucose deprivation incubation. Briefly, treated NP cells were completely lysed in ice-cold RIPA Lysis Buffer containing 1% Protease Inhibitor Cocktail (Sigma-Aldrich) and then centrifuged at 12000 r/min for 15 min. The bicinchoninic acid protein assay was performed to monitor the protein concentration. Then, proteins were separated in a 10% SDS-PAGE gel and transferred to PVDF membranes. The membranes were subsequently blocked with 3% bovine serum albumin/Tris-buffered saline containing Tween 20 for 2 hours and then incubated with anti-MMP-13 (Affinity, AF5355, 1 : 1000), anti-aggrecan (Affinity, DF7561, 1 : 1000), anti-collagen II (Affinity, AF0135, 1 : 1000), and anti-GAPDH (Sangon, D110016, 1 : 1000) at 4°C overnight and then incubated with a 1 : 5000 secondary antibody for 2 hours. The protein signals were detected by the enhanced chemiluminescence method. GAPDH was used as an endogenous normalization of protein. The intensities of bands were analyzed using ImageJ.
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10

Immunoblotting of Cellular Proteins

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Briefly, the adherent cell culture was washed with PBS on ice. Then, whole-cell lysates were prepared via cell lysis using RIPA Lysis Buffer (P0013B, Beyotime Biotech, Shanghai, China) containing 1X Protease and phosphatase inhibitor cocktail (P1045, Beyotime Biotech, Shanghai, China) and subjected to ultrasonication. The total protein concentration in the lysate was determined using the BCA Protein Assay Kit (P0012, Beyotime Biotech, Shanghai, China). Then, 20 μg of proteins was subjected to 10% SDS-PAGE. The separated protein bands were immunoblotted onto polyvinylidene difluoride membranes (ISEQ 000 10, Millipore, Burlington, MA, USA). The membranes were blocked with 5% non-fat milk powder in TBS buffer. Primary antibodies were incubated overnight at 4 °C followed by secondary antibodies for 2 h at room temperature. After adding Super Signal West Pico PLUS substrate (Cat 34580, ThermoFisher Scientific, Waltham, MA USA), chemiluminescence signals on the membrane were visualized using iBright FL1000 (ThermoFisher Scientific, Waltham, MA USA). The antibodies used in this study were anti-PLK1 rabbit polyclonal antibody (1:500 dilute; D321829, Sangon Biotech, Shanghai, China), anti-GAPDH rabbit polyclonal antibody (1:6000 dilute; D110016, Sangon Biotech, Shanghai, China), and HRP-conjugated goat anti-rabbit IgG (1:6000 dilute; D110058, Sangon Biotech, Shanghai, China).
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