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62 protocols using liperfluo

1

Lipid Peroxidation Assessment in Cells

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Tumor cells were seeded in six-well plates with glass bottoms before staining. For C11-BODIPY staining, 1 ml PBS containing 10 μM BODIPY 581/591 C11 (Thermo Fisher Scientific) was added to the cells. After incubation for 30 min at 37 °C, the cells were resuspended and analyzed immediately on a flow cytometer. To perform Liperfluo staining, cells were treated with Liperfluo (10 μM, Dojindo, Japan) for 1 h at 37 °C, digested by trypsin and immediately analyzed on a flow cytometer. The FITC channel was selected to measure fluorescence intensity.
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2

Live-cell imaging of cell cultures

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Cells (1×104 cells per dish) were plated in 3.5 mm dishes and incubated for the indicated times. After treatment, the cells were incubated in medium containing 10 µm Liperfluo (Dojindo) for live‐cell imaging. The cells were imaged at 40× magnification using a Leica confocal microscope. All images were acquired with the same instrument parameters and processed with the same settings to maximize the ability to compare results between conditions.
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3

Intracellular Lipid Peroxide Detection

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Liperfluo (#L248, Dojindo, Japan), a lipid fluorescent peroxide probe, was used to detect intracellular lipid peroxides. The cells in the six-well plate were washed with HBSS, and the final concentration of 5 μM Liperfluo working solution (DMEM diluted) was added into the cells. After incubation for 30 min, the cells were washed twice with HBSS and detected by flow cytometry, with Ex: 488 nm.
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4

Ferroptosis and Autophagy Assessment

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Anti-15Lipoxygenase 1 (Abcam, ab244205), anti-Glutathione Peroxidase 4 (GPX4) (Abcam, ab125066), anti-Calnexin (Proteintech, 10427-2-AP), anti-ATG4B (CST, 13507S), anti-ATG4B (Proteintech, 15131-1-AP), anti-LC3B (CST, 2775), anti-GABARAP (Abgent, AP1821a), anti-SQSTM1/p62 (Abcam, ab56416), anti-GFP (Abcam, ab290), anti-FLAG (Sigma, F1804), anti-Tom20 (Proteintech, 11802-1-AP), anti-GAPDH (Fudebio-tech, FD0063), anti-β-actin (Fudebio-tech, FD0060), normal rabbit IgG (Santa Cruz, sc-2027), goat anti-mouse IgG-HRP (Fudebio-tech, FDM007), goat anti-rabbit IgG-HRP (Fudebio-tech, FDR007), 1S, 3R-RSL3 (TargetMol, T3646), Fer-1 (Targetmol, T6500), PD146176 (Sigma, P4620), ML355 (Selleck, S6557), Zileuton (Selleck, S1443), Rapamycin (TargetMol, T1537), Bafilomycin A1 (BaF1, Sigma, B1793) Lipofectamine™ LTX Reagent with PLUS™ Reagent (Thermo Fisher Scientific, 15338100), Protein A/G Plus-Agarose Immunoprecipitation Reagent (Santa Cruz, sc-2003), DAPI (Beyotime, C1002), LiperFluo (DOJINDO, L248), Lipoxygenase Inhibitor Screening Assay Kit (Cayman, 760700). PC (1,2-dioleoyl-sn-glycero-3-phosphocholine, Avanti, 850375), PE (1-stearoyl-2-eicasotetraenoyl-sn-glycero-3-phosphatidylethanolamine, Avanti, 850804), PE-OOH (1-stearoyl-2-15-hydroperoxy-eicasotetraenoyl-sn-glycero-3-phosphatidylethanolamine, Cayman, Cay25856-100).
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5

Mouse Sperm Oxidative Stress Analysis

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Mouse sperm (2 × 106 sperm) were collected from the cauda epididymis and washed with PBS thrice, and then incubated with a fluorescence probe in darkness. Liperfluo (Dojindo), indicator of lipid peroxidation, was added to each sample at a final concentration of 2 μm and incubated for 30 min at 37 °C. A Si‐DMA kit (Dojindo) evaluated mitochondrial singlet oxygen (1O2) levels in samples that were incubated at a final concentration of 50 nm for 45 min at 37 °C. For sperm analysis of the cellular ROS and mitochondrial membrane potential (MMP), DCFH‐DA (Yeasen, Shanghai, China; magnification = 1000×), JC‐1 (Yeasen; magnification = 200×), and TMRM (M20036, Invitrogen, Waltham, MA, USA; magnification = 1000×) probes were incubated at 37 °C for 30 min. After incubation, samples were washed twice and resuspended in PBS for flow cytometry assay (Cytoflex S flow cytometer, Beckman, CA, USA). A total of 10 000 events were collected for measuring fluorescence intensity.
Meanwhile, after fluorescent staining, 20 μL of a sperm suspension was smeared on a clean slide glass and covered with 22 mm square‐shaped coverslips. Fluorescent staining of Liperfluo (Ex: 488 nm) and si‐DMA (Ex: 640 nm) in sperm were also recorded under an upright fluorescent microscope (Zeiss 710, Jena, Germany).
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6

Oxidative Stress Evaluation in H9C2 Cells

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Harvested at the density of 10 × 106, H9C2 cells were stained with H2DCFDA (MedChemExpress, China) to detect ROS level, and stained with Bodipy (BODIPY™ 581/591 C11, Invitrogen, USA) or Liperfluo (Dojindo, Shanghai, China) to detect lipid peroxidation level. The signals were collected using by flow cytometry (CytoFLEX S equipped with Kaluza analysis 2.1, Beckman coulter, USA) or imaged by an Olympus FV3000 confocal laser scanning microscope (Olympus, Japan).
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7

Live-cell Fluorescent Imaging of Cellular Processes

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Cells were seeded on 35mm glass bottom dishes (MatTek Corporation) and incubated with Liperfluo (10 μM) (Dojindo Molecular Technology, Inc.) or diaminorhodamine-4M (DAR-4AM) (5 μM) for 30 minutes at 37 °C. Cells were washed with Phosphate-Buffered Saline (PBS), the media replaced and the dish inserted into a closed, thermo-controlled (37ºC) stage top incubator (Tokai Hit Co., Shizuoka-ken, Japan) atop the motorized stage of an inverted Nikon TiE fluorescent microscope (Nikon Inc.) equipped with a 60X oil immersion optic (Nikon, CFI PlanFluor, NA 1.43) and NIS Elements Software. Liperfluo or DAR-4AM was excited using a Lumencor diode-pumped light engine (SpectraX, Lumencor Inc.) and detected using an ORCA-Flash 4.0 sCMOS camera (HAMAMATSU Corporation) and excitation and emission filters from Chroma Technology Corp. For time-lapse experiments, data was collected every 5 minutes for 3 hours, on approximately 10-20 cells per stage position, with 10-15 stage positions in each of 3 separate experiments per condition. Data were analyzed using NIS Elements (Nikon Inc).
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8

Multiparameter Flow Cytometry Analysis

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The cells were washed and resuspended in phosphate-buffered saline containing 3% FBS, followed by incubation with fluorescent-conjugated antibodies specific for CD49d (clone: 9F10), CD71 (clone: GA-R2), and CD235a (clone: M-A712) (Becton Dickinson). Propidium iodide (PI; Thermo Fisher Scientific) was used for the marking of dead cells. Liperfluo (Dojindo, Kumamoto, Japan) was used for the detection of cellular lipid peroxide. FerroFarRed (Goryo Chemical, Sapporo, Japan) was used for the detection of intracellular labile iron. Data were acquired with FACS Aria II or FACS Canto II (Becton Dickinson) and were analyzed using FlowJo version 7.6.5 software (TreeStar, Ashland, OR, www. flowjo. com).
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9

Lipid Peroxidation Quantification in EESCs

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Lipid peroxidation was detected via Liperfluo (Dojindo, Kumamoto, Japan). Cells were incubated with 5 μM Liperfluo for 30 min at 37 °C in accordance with the manufacturer’s instructions. After removing Liperfluo, EESCs were washed three times with HBSS. Fluorescence microscopy (Nikon, Tokyo, Japan) was used to obtain fluorescence images from 3 separate dishes for each treatment.
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10

Measuring Lipid ROS in Ferroptosis

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Lipid ROS, considered one of the most important markers of ferroptosis, was measured by using Liperfluo (#L248, Dojindo, Kumamoto, Japan). We seeded cells in 24-well plates, pretreated them with erastin-containing medium for 24 hours, and incubated them for 30 minutes in the dark with Liperfluo at a working concentration of 1 μM. PBS was then used to wash the cells three times. Finally, a fluorescence microscope (Olympus, Tokyo, Japan) was used to acquire images at a magnification of ×40.
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