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7 protocols using apc cy7 conjugated anti cd8

1

Characterizing CAR-T Cell Differentiation

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CAR-T cell differentiation stages were assessed by flow cytometry. CAR-T cells were harvested and washed twice with 1 ml of phosphate-buffered saline containing 2% foetal bovine serum (FBS; Gibco), followed by incubation with the following antibodies: APC-Cy7-conjugated anti-CD8 (344714, BioLegend, California, USA), Alexa Fluor 700-conjugated anti-CD4 (56004942, eBioscience), PE-conjugated anti-CCR7 (353204, BioLegend), PerCP-Cy5.5-conjugated anti-CD45RA (304122, BioLegend), and PE-Cy7-conjugated anti-CD127 (25-1287-42, eBioscience)24 (link).
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2

Assaying CD8+ T Cell Activation

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After transfection (24 h), primary CD8+T cells were stimulated using anti-CD3/CD28 (3 μg/ml) for 24 h. The protein transport inhibitor (GolgiStop; 1 μl/ml, BD Biosciences) was added to the culture for the last 6 h. The cells were stained with PE-cy7-conjugated anti-CD3 and APC-cy7-conjugated anti-CD8 (Biolegend). Subsequently, intracellular staining was performed by incubating the cells in 1X Perm/Wash Buffer for 15 min in the dark, followed by incubation with APC-conjugated anti-IFN-γ and FITC-conjugated anti-granzyme B for 30 min at 4°C. After staining, the cells were fixed in 1% formaldehyde. The intracellular expression of IFN-γ and granzyme B was determined using a BD LSR II flow cytometer and data were analyzed using the FlowJo software.
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3

Phenotyping and Transduction Efficiency of CAR T Cells

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All samples were washed twice in 0.1 mL of phosphate-buffered saline (PBS) containing 2% FBS. The transduction efficiency and CD4/CD8 ratio were determined by labeling CAR T cells with a FITC-labeled human CD19 protein, Fc Tag (CD9-HF251, ARCO, Biosystems, Beijing, China), an APC-conjugated antibody against CD8 (catalog no. 344722, BioLegend, California, USA), and a PE-Cy7-conjugated antibody against CD4 (25-0047-42, eBioscience, San Diego, CA) at 4 °C for 45 min in the dark.
For assessing the CAR T cell phenotype to analyze CAR T cell differentiation stages, CAR T cells were incubated with the following antibodies: APC-Cy7-conjugated anti-CD8 (344714, BioLegend), AF700-conjugated anti-CD4 (56004942, eBioscience), PE-conjugated anti-CCR7 (353204, BioLegend), PerCP-Cy5.5-conjugated anti-CD45RA (304122, BioLegend), and PE-Cy7-conjugated anti-CD127 (25-1287-42, eBioscience).
CD19 expression on Raji cells was detected by staining with an APC-conjugated antibody against CD19 (302212, BioLegend), and monocyte CD14 expression was determined by staining with an Alexa Fluor 700-conjugated antibody against CD14 (325614, BioLegend).
After antibody labeling, samples were washed twice in 0.1 mL of PBS containing 2% FBS before detection using an Attune NxT flow cytometer (Thermo Scientific, USA). Data were analyzed using FlowJo V10 (TreeStar, USA).
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4

Flow Cytometry Analysis of Immune Cell Populations

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Single cell suspensions of splenocytes were resuspended in PBS containing 2% fetal bovine serum and stained on ice in the dark for 20 minutes. Antibodies used were PE conjugated anti-CD138, anti-CD86 and anti-Ly5.2 (BD Biosciences), PerCP conjugated anti-CD3, anti-CD4 and anti-CD8 (BD Biosciences) and anti-GL7 (eBioscience), PE-Cy7 conjugated anti-CD95 and anti-Ly5.1 (BD Biosciences), Pacific Blue conjugated anti-B220 (Biolegend), eFluor 660 conjugated anti-GL7 (eBioscience), and APC conjugated anti-CXCR4 and anti-CD138 (BD Biosciences), APC-Cy7 conjugated anti-CD8 (Biolegend) and APC-Cy7 conjugated anti-Ly5.1 (BD Biosciences). For each infection, C57Bl6/J mice were infected in parallel with wt MHV68. Gates for the YFP+ populations were set based on the level of auto-fluorescence detected in the FITC channel from mice infected with wt virus as shown in Fig 1A. Data was collected on an LSRII flow cytometer (BD Biosciences) and analyzed using FlowJo software (Tree Star Inc., http://www.flowjo.com).
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5

Apoptosis and activation of CD8+ T cells

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After transfection (72 h), Jurkat cells were stained with PE-conjugated anti-Annexin V and 7-AAD (Biolegend). After transfection (24 h), primary CD8+T cells were stimulated using anti-CD3/CD28 (3 μg/ml). After stimulation (48 h), CD8+T cells were stained with PE-cy7-conjugated anti-CD3, APC-cy7-conjugated anti-CD8, PE-conjugated anti-Annexin V, and 7-AAD (Biolegend). The cells were analyzed using a BD LSR II flow cytometer and the FlowJo software.
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6

Flow Cytometric Analysis of Breast Cancer Cells

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3D-O matrices were enzymatically digested with collagenase (20 mg/ml for 2–3 h at 37°C) on day 4. BCa cells were isolated and identified by gating cells with a high DiO signal (excitation, 488 nm; emission, 530/30 nm). Antibodies used to evaluate hypoxic status and surface marker expression were AlexaFluor 647 conjugated anti-HIF-1 α (359706, BioLegend, CA), APC-Cy7 conjugated anti-CD8 (344714, BioLegend, CA), PE-conjugated anti-PD-L1 (393608, BioLegend, CA), PE-conjugated anti-MUC-1 (355608, BioLegend, CA), and PerCP-Cy5 conjugated anti-CD73 (344014, BioLegend, CA). Cell viability was evaluated by using a Sytox Blue live-dead fluorescent dye (S34857, Invitrogen, CA) possessing excitation, 358 nm; emission, 461 nm or Live/Dead Blue cell stain (L34962, Thermo Fischer Scientific, MA). For all analyses, a minimum of 5,000 events were acquired using BD FACS Fortessa and FACSDiva v6.1.2 software or BD FACS Accuri and BS Accuri C6 software (BD Biosciences), respectively. The BCa cell counts were always normalized to a predetermined number of counting beads (424902, BioLegend, CA), and mean fluorescence intensity (MFI) ratios for each of the targets as mentioned above studied were assessed with respect to the corresponding isotype in the BCa-DiO+ cells. The data was analyzed using FlowJo program v10 (Ashland, OR).
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7

Multiparameter Immunophenotyping of T Cells

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The following antibodies from BioLegend (San Diego, CA) were used for flow cytometry: APCCy7-conjugated anti-CD3 (clone SK7); BV711-conjugated anti-CD4 (clone RPA-T4); APCCy7-conjugated anti-CD8 (clone SK1); BB515-conjugated anti-CD25 (clone 2A3); BV650-conjugated anti-CD38 (clone HB-7); BV650-conjugated anti-CXCR3 (clone G025H7); PE-Cy7conjugated anti-CCR6 (clone G034E3); PerCP-eFluor 710-conjugated anti-CD39 (clone eBioA1); AlexaFluor 700-conjugated anti-CD45RA (clone HI100); BV421-conjugated anti-PD1 (clone EH12.2H7); PE-Dazzle-conjugated anti-CCR4 (clone L291H4); BV605-conjugated anti-Ki-67 (clone Ki-67); PE-conjugated anti–FOXP3 (clone 206D); FITC-conjugated anti-IFN-γ (clone B27); PerCP-Cy5.5-conjugated anti IL-17A (clone BL168); PE-conjugated anti-IL-21 (clone 3A3-N2); Live/Dead violet dye; and PE-Dazzle-conjugated anti-IL-4 (clone MP4–25D2). AlexaFluor 647-conjugated anti-CXCR5 (clone RF8B2) was from BD and PE-Cy7-conjugated anti-ICOS (clone C398.4A) was from eBioscience.
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