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Propidium iodide flow cytometry kit

Manufactured by Abcam
Sourced in United Kingdom, United States

Propidium Iodide Flow Cytometry Kit is a fluorescent dye used to stain and quantify DNA content in cells. It intercalates with DNA and emits red fluorescence upon excitation, allowing for analysis of cell cycle and apoptosis by flow cytometry.

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71 protocols using propidium iodide flow cytometry kit

1

Cell Cycle Analysis by Flow Cytometry

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Flow cytometric technique was used to analyse the cell cycle as per standard procedure.44 (link) Propidium Iodide Flow Cytometry Kit (Abcam, Cat# ab139418) was used for this assay. Briefly, AGS cells were grown in 6 well plate and after the treatment was over cells were harvested and fixed in chilled ethanol (70% v/v) with gentle vortexing and the cells were kept overnight at 4°C. Next day the fixed cells were washed in PBS and stained using Propidium Iodide Flow Cytometry Kit (Abcam, Cat# ab139418) suggested in the manufacturer’s protocol followed by flowcytometric screening. The analysis was done in BD LSR Fortessa using BD FACS Diva 6.2 software. 104 cells were evaluated per set and experiments were repeated thrice.
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2

Formulation and Characterization of Dox-Loaded Lipid Nanoparticles

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Dioleoylphosphatidylethanolamine (DOPE), Cholesteryl Hemisuccinate (CHEMS) were purchased from Cayman Chemical (Ann Arbor, MI, USA). Cholesterol (CHOL) was obtained from Sigma Aldrich (St. Louis, MO, USA), and 1,2-Distearoyl-sn-glycero-3-phosphoethanolamine (methoxy(polyethylene glycol)-2000) (DSPE-PEG) was bought from Laysan Bio, Inc. (AL, USA). Dox was obtained from AstaTech (Bristol, PA). Cell Titer-Glo® and CellTiter-Glo® 3D Cell Viability Assay reagents were purchased from Promega (Madison, WI). Propidium iodide (PI) flow cytometry kit was obtained from abcam (Cambridge, UK), Annexin V − FITC + PI apoptosis detection kit purchased from Leinco Technologies, inc. (St. Louis, MO). Pooled Normal Human Serum was purchased from Innovative Research (MI, USA), Amicon Ultra 30kDa filter centrifuge tubes were purchased from EMD-Millipore (Billerica, MA), 96-well hanging drop plates for 3D spheroids formation were obtained from 3D Biomatrix (Ann Arbor, MI), and Spectrum Spectra/Por 1 RC Dialysis Membrane Tubing 6000–8000 Dalton MWCO was also purchased from Fisher Scientific (Waltham, MA). DiR iodide (1,1-dioctadecyl-3,3,3,3-tetramethylindotricarbocyanine iodide) was purchased from AAT Bioquest, Inc. CA, USA.
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3

Cell Cycle Analysis of A549 Cells

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A549 cells were seeded into 6-well plates at a density of 2× 105 cells/well and incubated for 24 hrs and infected with Bag-1 or negative control siRNA for 48 hrs and then treated with 5 μg/mL cisplatin for an additional 24 hrs. After that, the cells were measured for cell cycle distribution using the Propidium Iodide (PI) flow cytometry kit (Abcam, Cambridge, UK) using the manufacturer’s recommendations. In brief, the cells were washed and incubated with trypsin for 3 mins at 37°C and then fixed with 66% ethanol on ice. 1×106 cells per group were stained with 5% PI in phosphate-buffered saline (PBS) containing 0.5% RNase A and subjected to DNA content analysis using FACStar Plus flow cytometer (BD Biosciences, Franklin Lakes, NJ, USA). The mean value of three independent experiments was analyzed by using FlowJo (BD Biosciences).
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4

Generating UV-Induced Melanoma Cell Lines

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YUMMER1.7 was derived from YUMM1.7, which was generated from a cutaneous mouse melanoma containing the alleles BrafV600E, Pten−/−, Cdkn2a−/− (Meeth et al., 2016 (link)). Irradiation of YUMM1.7 included three rounds of 1500J/m2 UVB (3W for 500s) when cells were 50–70% confluent. Cells were given time to recover and proliferate before being re-plated and proceeding to the next UV treatment. After the final UV treatment, a single cell was clonally expanded. YUMM1.7 and YUMMER1.7 DNA content were assessed using a Propidium Iodide Flow Cytometry Kit according to manufacturer instructions (Abcam, Cambridge, UK). YUMMER1.7-GFP and YUMM1.7-GFP were generated using a P-YUK-GFP plasmid with PiggyBac Transposase Expression Vector, a gift from Tian Xu, Department of Genetics, Yale University. Transfection was done with Lipofectamine 2000 (Invitrogen, Carlsbad, California) and cells were selected using Blastomycin resistance. All cell lines were maintained in DMEM/F12 media containing 10% FBS and with 1% nonessential amino acids and 1% penicillin-streptomycin.
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5

Apoptosis Detection in H69 Cells

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The H69 cells (3×105 cells), treated with 20 µM SFN for 96 h and untreated control cells, were subsequently prepared for detection of cellular apoptosis using flow cytometry. Apoptosis was detected by analyzing the sub-G1 peaks (DNA fragmentation). The cells were stained using a Propidium Iodide Flow Cytometry kit (Abcam), according to the manufacturer's instructions. Flow cytometry was performed using a Gallios flow cytometer and analyzed using the Kaluza (v1.0) Flow Cytometry Analysis software (both Beckman Coulter, Inc.).
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6

Cell Cycle and Apoptosis Analysis of VIIb

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Cell cycle analysis and apoptosis rates following VIIb treatment were investigated using a Propidium Iodide Flow Cytometry Kit (ab139418; Abcam, Cambridge, UK) [60 (link)] and Annexin V-FITC apoptosis kit (Catalog: K101-25; BioVision Research Products, San Francisco, CA, USA) [61 (link)], respectively, following the manufacturer’s instructions as stated by a previous study [17 (link)].
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7

Pelargonidin Modulates Cell Cycle

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Briefly, the JB6 P+ cells were incubated in 100-mm dishes with 5% FBS/MEM at a density of 3×105 cells per dish and allowed to adhere via overnight incubation. After treatment with various concentrations of pelargonidin (10, 30, 50, 70 and 100 µM) in 1% FBS for 3 days, the cells were collected and fixed with chilled 66% ethanol. DMSO (0.1%) was used as a vehicle control. The cells were stained by propidium iodide flow cytometry kit (cat no. ab139418, Abcam, Cambridge, MA, USA). The stained cells were further analyzed by Beckman Coulter Gallios Flow Cytometer. The cell cycle distributions were recorded by Gallios software during sample acquisition. Data were analyzed from three parallel experiments.
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8

Cell Cycle Analysis of SKOV3 Cells

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Cell cycle assay was studied to detect the divisional phases of the cells, and to do this DNA content is utilized. The percentages of untreated SKOV3 cells and treated SKOV3 cells (treated for 24 h with an IC50 value of SnO2 NPs and FA-SnO2 NPs) through the different phases of the cell cycle were evaluated using a flow cytometry kit (Abcam, Propidium Iodide Flow Cytometry Kit, catalog ab139418) as previously mentioned [45 (link),46 (link)]. Briefly, SKOV3 cells were seeded and incubated overnight then a cell density of about 1 x106 cells were placed in a 6-well culture plate for 24 h. After that, these cells were treated with SnO2 NPs and FA-SnO2 NPs for 24 h. Subsequently, the cells were trypsinized, harvested, and overnight fixed in ice-cold ethanol (70%). Furthermore, the cells were centrifuged, washed with PBS twice, treated with RNase and then added to PI solution (40 μM ml-1 in PBS) for 30 min in the dark at 37°C for staining the control and treated cells. Finally, the percentages of cells existing in each cell cycle phase (sub-G1, G0/G1, S, and G2/M phases) were measured using DNA quantification using flow cytometry and the obtained results were displayed in the form of a histogram.
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9

Cell Cycle Analysis of F2 Fraction

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The effect of F2 fraction on cell cycle distribution was assessed by flow cytometry after staining of HaCaT-ras A5, and HaCaT-ras II4 cells with propidium iodide (PI). Briefly, both cells lines (1x105cells/mL) were treated with different concentrations (25 and 50 μg/mL) of F2 fraction and cultured in 6-well plates for 48 h. The treated cells were harvested, washed with PBS and fixed with 70% ethanol on ice. The cells were then washed with cold PBS, suspended in 200 μL 1× Propidium Iodide + RNase staining solution and incubate at 37 °C in the dark for 30 min. Propidium Iodide Flow Cytometry Kit (Abcam, Cambridge, UK) was used for cell cycle analysis. The DNA content of the cells was measured by C6 flow cytometer (BD Accuri Cytometers, Ann Arbor, MI USA) and the population of each phase was determined using CFlow Plus analysis software (BD Accuri Cytometers, Ann Arbor, USA).
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10

MicroRNA Modulation of Cell Cycle

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C4-2B cells were co-transfected with miR-221 and miR-222 precursors or inhibitors (Ambion) at a final concentration of 20 nM each using Lipofectamine RNAiMAX Transfection Reagent (Life Technologies) according to the manufacturer’s instruction. Cell number was counted 3 days after transfection. Cell cycle analysis was performed in parallel using Propidium Iodide Flow Cytometry Kit (Abcam). Cell cycle distribution of 10,000 gated cells is presented.
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