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48 protocols using ab4822

1

Protein Expression Analysis of Cellular Extracts

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CFs were washed with PBS (0.1 mol/L, pH 7-7.4) three times, lysed in a lysis buffer for 30 min at 4 °C, and then scraped off using a cell scraper before being mixed with a one-quarter volume of 5× loading buffer. The cell protein mixture was then boiled in a 100 °C water bath and cooled to room temperature. The protein concentration was determined using a Bradford protein assay kit (Amresco, M173-KIT). Equal amounts of protein (50 µg) were separated on 10% SDS-polyacrylamide gels and transferred onto nitrocellulose membranes. The strips were blocked with 5% nonfat milk for 1 h at room temperature. The strips were then incubated overnight with primary antibodies against AAT1 (Sigma, AV48205, 1:500), collagen I (Abcam, ab254113, 1:500), collagen III (Abcam, ab7778, 1:500), α-SMA (Abcam, ab5694, 1:500), β-catenin (Abcam, ab6302, 1:500), p-P38 MAPK (Abcam, ab4822, 1:500), P38 MAPK (Abcam, ab170099, 1:500) and GAPDH (Abcam, ab181602, 1:2000) diluted in PBS with 0.05% Tween 20 at 4 °C. The strips were rinsed using PBS with 0.05% Tween 20 for 30 min, followed by incubation with secondary antibodies for 1 h at room temperature. All protein bands were detected using Amersham ECL Western blotting detection reagents (GE Healthcare, RPN2106) and analyzed with a biological electrophoresis image analysis system.
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2

S100A12 Regulates PPAR-γ and Kinase Pathways

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Cells were grown in 100 mm petri dishes or chamber slides to 80 % confluence. After short washing with PBS, cells were incubated with 2 % (w/v) BSA in calcium binding buffer for 1 h at 37 °C. Afterwards, incubation with 5 µM endotoxin free rS100A12 in calcium binding buffer or with calcium binding buffer alone, as negative control, was performed for 90 min at 37 °C. Cells were lysed for Western blot analysis or fixed using 4 % (w/v) paraformaldehyde for immunocytochemical staining. Western blot analysis of PPARγ synthesis was performed using a monoclonal antibody (abcam191407). Additionally, Western blot analyses of tyrosine kinases Fyn (#4023, cell signalling), pFyn (ab53690, abcam), Lyn (#2796, cell signalling), pLyn (ab33914, abcam) and mitogen-activated kinase p38 (ab4822, abcam) were performed.
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3

Western Blot and qRT-PCR Analysis of Cardiac Proteins

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We isolated the total proteins in the cardiomyocytes
or heart tissue and conducted protein electrophoresis
by sodium dodecyl sulfate polyacrylamide gel
electrophoresis (SDS-PAGE). The protein was
transferred to immobilized membranes (Millipore,
Billerica, MA, USA), which were incubated with
the corresponding primary antibodies that included
total (T) P38 (1:1000 dilution, #ab178867) and
phosphorylated (P) P38 (1:1000 dilution, Abcam
#ab4822), NADPH oxidase 4 (NOX4, 1:1000 dilution, #ab154244) and glyceraldehyde-3-phosphate
dehydrogenase (GAPDH, 1:1000 dilution, Cell
Signalling Technology, #5174). After incubation with
the secondary antibody, the blots were developed with
enhanced chemiluminescence reagents (Bio-Rad,
Hercules, CA, USA) and captured by a ChemiDoc MP
Imaging System (Bio-Rad). GAPDH was used as an
internal reference protein.
Total RNA from mouse heart tissue or cardiomyocytes was extracted. We reverse transcribed
2 μg of mRNA into cDNA with a cDNA Synthesis Kit (Roche Diagnostics). A Light cycler 480
instrument (software version 1.5, Roche) and SYBR Green PCR premix (Roche) were used for
the amplification reaction. GAPDH was used as an internal reference gene
to standardize and quantify gene expressions.
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4

Atractyloside A Modulates Intestinal Barrier

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Specimens were collected from Hubei Province in China and identified as the rhizomes of Atractylodes lancea (Thunb.) DC. by Jiachun Chen from Huazhong University of Science and Technology and registered as voucher specimen no. 041005. AL was stir fried with wheat bran, in accordance with the procedures described in the National Commission of Chinese Pharmacopoeia (2015). domperidone (Dom) supplementary tablets were obtained from Xian Janssen Pharmaceutical Ltd. (Xian, China; Drug approval number: H10910003). Silica gel for use in the column was provided by Qingdao Haiyang Chemical Co., Ltd. (Qingdao, China). Chemical reagents were purchased from Sigma Chemicals Ltd. (St. Louis, MO, United States) or from the following suppliers: atractyloside A (PUSH Biotechnology, Chengdu, China), domperidone (Janssen, Xi’an, China), and hematoxylin and eosin staining solutions (Solarbio, Beijing, China). The following antibodies were supplied by Abcam (US): goat anti-rabbit IgG (ab205718), anti-occludin (ab222691), anti-p38 (ab197348), anti-p-p38 (ab4822), and anti-myosin light-chain kinase (MLCK) (ab236299).
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5

Antibody Panel for TGF-β1 and MMPs

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The recombinant protein for human TGF-β1 (#P01137) and mouse monoclonal antibodies against human TIMP-1 (#MAB970), TIMP-3 (#MAB973), MMP-2 (#MAB9022), and MMP-9 (#MAB911) were acquired from R&D Systems, Inc (MN, USA). The rabbit polyclonal antibodies against CTGF (#ab6992), fibronectin (#ab2413), and α-SMA (#ab5694) were acquired from Abcam Inc. (Cambridge, UK). The mouse monoclonal antibodies against p38 (#ab31828), p38 phosphorylation (p-p38, #ab4822), JNK (#ab208035), JNK phosphorylation (p-p38, #ab76572), ERK (#ab184699), and ERK phosphorylation (p-p38, #ab201015) were all acquired from Abcam Inc. (Cambridge, UK). The secondary antibodies against rabbit (#A5795) and mouse (#A9044), as well as GAPDH (#G5262) and β-actin (#A5441), were acquired from Sigma-Aldrich (St. Louis, MO, USA) [6 (link)].
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6

Western Blot Analysis of Key Proteins

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Protein extracts were separated and transferred to a polyvinylidene fluoride membrane. First, the primary antibody was added to the membrane for overnight incubation at 37 °C. Then, horseradish peroxidase-labeled secondary antibody (ab205718, goat anti-rabbit or goat anti-mouse, 1:10,000, Abcam) was added for further incubation followed by visualization using enhanced chemiluminescence (Shanghai Baoman Biotechnology, Shanghai, China). The primary antibodies procured from Abcam (CA, UK) included KLF4 (ab215036, 1:1000, rabbit; ab214666, 1:1000, rabbit), α‑SMA (ab32575, 1:1000–1:5000, rabbit), PCNA (ab92552, 1:1000–1:10000, rabbit), MMP2 (ab92536, 1:1000–1:5000, rabbit), MMP3 (ab52915, 1:1000–1:20000, rabbit), MMP9 (ab76003, 1:1000–1:20000, rabbit), p-p38 (ab4822, 1:1000, rabbit), p38 (ab170099, 1:1000–1:5000, rabbit). In addition, GAPDH (ab181602, 1:10,000, rabbit, Abcam) was used as an internal reference, and the gel image analysis software was used for quantitative analysis.46 (link)
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7

Evaluation of Phosphoprotein Expression

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Expression of phosphoproteins for the samples of all the subjects (n = 10) were evaluated using anti-phospho-Forkhead box protein O1 (FOXO1Ser256, 1:1000, sc-101681), anti-phospho-AMP-activated protein kinase (AMPKα1/2Thr172, 1:200; sc-33524, all from Santa Cruz Biotechnology, USA), anti-phospho-p38 mitogen- activated protein kinase (p38 MAPKThr180/Tyr182, 1:500; ab4822), anti-phospho-Ca2+/calmodulin-dependent protein kinase (CaMKIIThr286, 1:2500; ab32678) or anti-GAPDH (1:2500; ab9485) antibodies (the latter three were all from Abcam, UK), and anti-rabbit secondary antibody (Cell Signaling, USA) as described elsewhere [29 (link)]. Luminescent signals were captured using a ChemiDoc imaging system (Bio-Rad, USA). All data are expressed as the ratio of target protein to GAPDH.
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8

Histological Analysis of Femur Explants

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Femur explants were fixed in 4% paraformaldehyde and embedded in paraffin. Serial 5 μm sections were stained with hematoxylin–eosin-safran reagent using standard protocols. For immunohistochemical assessment, sections were labeled with the following antibodies and a Dako Envision Kit: anti-Col X (BIOCYC, N.2031501005; 1:50 dilution), anti-Sox9 (polyclonal antibody, Santa Cruz Biotechnology Inc., catalog D0609; dilution 1:75), anti-phosphorylated ERK1/2 (Thr180/Tyr182) (Cell Signaling Technology, #4370; 1:100 dilution), anti-phosphorylated p38 (Abcam, Ab4822; 1:200 dilution), and anti-Ki-67 (Abcam, Ab16667; 1:3 000 dilution). Images were captured with an Olympus PD70-IX2-UCB microscope and quantified using cellSens software.
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9

Sanguinarine Modulates Phosphorylated PMK-1 in Nematodes

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Nematodes were synchronized and treated for 1 day with or without 0.2 μM sanguinarine starting at L4 larvae stage. After worms were homogenized in liquid nitrogen, the homogenate was lysed on ice for 60 minutes in lysis buffer (BioTeKe). The lysates of total protein were loaded (40μg per well) and separated on a 10% SDS polyacrylamide gel. Proteins were then transferred to immobilon-PSQ transfer PVDF membrane (Millipore, Bedford, MA). Phosphorylated PMK-1 protein was detected using an anti-active p38 polyclonal antibody from rabbit (1:1000 dilution; Abcam, ab4822), anti-p38 antibody from rabbit (1:1000 dilution; Abcam, ab170099) and anti-beta actin antibody (1:1000 dilution; Abcam, ab227387). The secondary antibody was a peroxidase-coupled anti-rabbit IgG (1:20000 dilution; Abmart). Blots were developed using Super Signal chemiluminescence substrate (Pierce). Band intensities were measured using Image J software.
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10

Western Blot Analysis of Cell Signaling Proteins

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Cells were solubilized with radioimmunoprecipitation assay lysis buffer (Thermo Fisher Scientific, Inc.) and protein concentration was measured using a BCA kit (Thermo Fisher Scientific, Inc.). Approximately 50 µg of protein from each sample was separated by 12% SDS-PAGE and transferred to a polyvinylidene fluoride membrane (EMD Millipore, Burlington, MA, USA). Following blocking with 5% bovine serum albumin (1:100; Sigma-Aldrich; Merck KGaA) in Tris-buffered saline with Tween for 2 h at room temperature, membranes were incubated with Bcl-2 (ab178529), Bax (ab53154), pro-caspase-3 (ab32150) and active-caspase-3 (ab181418), phosphorylated (p)-p38 (ab4822), p38 (ab31828) and Ras (ab52939) primary antibodies at a dilution of 1:1,000 overnight at 4°C (all Abcam, Cambridge, UK), followed by incubation with goat anti-rabbit horseradish peroxidase conjugated secondary antibodies (at a dilution of 1:2,000; ab191866; Abcam) for 1 h at room temperature. GAPDH (ab8245; dilution 1:2,000; Abcam) was used as an internal control. Protein blots were visualized and analyzed using a chemiluminescence system (Bio-Rad Laboratories, Inc., Hercules, CA, USA) and autoradiography films (Kodak Image Station 440; Kodak, Rochester, NY, USA).
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