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12 protocols using baculogold

1

Design and Purification of Chimeric HPV18-L1/HPV45-RG1 VLPs

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The chimeric HPV18L1–45RG1 fusion construct was designed using CLC DNA workbench based on HPV18 L1 (accession number HPV18 AY262282) and HPV45 L2 (X74479), codon optimized for mammalian expression and synthesized by GeneArt (Regensburg, Germany). The gene sequence encoding the 20 aa (residues 16–35) RG1 epitope of HPV45 was inserted into the DE loop of HPV18 L1 between aa positions 134/135. The purified (Qiagen’s Gel extraction kit) L1-RG1 fusion gene was subcloned into the baculovirus transfer vector pSynwtVI- using BglII and KpnI sites [30 (link)]. Recombinant vectors were verified by bidirectional sequencing (VBC-Biotech, Vienna, Austria).
Transfer vector and linearized baculovirus DNA (BaculoGold; BD Bioscience) were co-transfected into Sf9 cells and recombinant baculoviruses isolated by plaque assay. Following expression in insect cells, VLP were purified as described [30 (link)–32 (link)]. Briefly, Sf9 insect cells were infected with amplified high-titer baculovirus stocks for three days. Cells were harvested and lysed by sonication in a breaking buffer (PBS + 0.8M NaCl + 2mM CaCl2 + 1mM phenylmethylsulfonyl fluoride (PMSF)) and incubated overnight with addition of 0.5% Brij58. VLP were purified by ultracentrifugation on sucrose-PBS cushions [35% (w/v)] and CsCl-PBS [29% (w/w)] density gradients.
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2

Production and Purification of Soluble HLA-DR1 and DM

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Soluble HLA-DR1*01:01 and DM were produced as described (Kim et al., 2014 (link); Narayan et al., 2007 (link)). Baculovirus DNA (BaculoGold; PharMingen) and transfer vectors carrying DR α- and β-chains were transfected together into Sf9 insect cells to produce recombinant viruses. Recombinant viruses were passaged three times before being used to infect High Five cells in ISFM media (Cleveland et al., 2014 (link); Inlow et al., 1989 (link)). DR1 proteins were purified from culture supernatants using immunoaffinity chromatography with a monoclonal antibody L243 to DR1 (purified from HB-55 hybridoma; American Type Culture Collection). Soluble DM was also expressed by High Five cells transduced with baculovirus containing the extracellular domains of genes encoding the α- and β-chains of human DM. The truncated DM α- and β-chains were modified to contain the FLAG epitope (DYKDDDDK) and c-Myc epitope (EQKLISEEDL), respectively, at their C-termini. DM protein was purified from culture supernatants with a monoclonal antibody to M2 (anti-FLAG) agarose resin (Sigma-Aldrich) and eluted with 5 mg/ml FLAG peptide (Sigma-Aldrich) in tris-buffered saline. DM was further concentrated and buffer exchanged into citric phosphate buffer, pH 6, with 05% wt/vol sodium azide and stored in aliquots at −80°C.
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3

Baculovirus Expression of HEV ORF2

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A genotype 1 (G1) HEV strain (GenBank accession no.: DQ079624) was isolated from a patient with acute hepatitis E in Myanmar in 1986. DNA fragments with deletions of the N-terminal 111 amino acids encoded by ORF2 were amplified by PCR with two primers, HEV-D13 (5′-AAGGATCCATGGCGGTCGCTCCAGCCCATGACACCCCGCCAGT-3′) and HEV-U14 (5′-GGTCTAGACTATAACTCCCGAGTTTTACCCACCTTCATCTT-3′). The PCR product contained the BamHI site before the start codon and the XbaI site after the stop codon. Then, the PCR product was purified using a QIAquick Gel Extraction Kit (Qiagen, Hilden, Germany) and cloned into TA cloning vector pCR2.1 (Invitrogen, Carlsbad, CA, USA), digested with BamHI and XbaI, and ligated with a baculovirus transfer vector, pVL1393 (Pharmingen, San Diego, CA, USA), to yield plasmid pVL5480/7126. To produce the recombinant baculovirus, the transfer plasmid pVL5480/7126 was mixed with baculoGold (Pharmingen) and lipofectin (GIBCO-BRL, Gaithersburg, MD, USA) and transfected into insect cells Sf9 (Riken Cell Bank, Tsukuba, Japan). The cells were incubated at 26.5 °C in TC-100 medium (GIBCO-BRL) supplemented with 10% FBS and 0.26% tryptose phosphate broth (Difco Laboratories, Sparks, MD, USA). The recombinant viruses were plaque-purified three times in Sf9 cells and designated as Ac5480/712657 (link).
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4

Production and Purification of Recombinant Rspo1 and HGF

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The recombinant Rspo1 proteins (rRspo1) and HGF proteins (rHGF) are as previously described16 (link). Basically, the complimentary DNAs (cDNAs) of human Rspo1 and HGF were amplified for the construction of 6-His fusion proteins, using the forward primer for Rspo1: 5′-TTGCGGCCGCATGCGGCTTGGGCTGTG-3′, and the reverse primer for Rspo1: 5′-GGGAATTCGGCAGGCCCTGCAGATGTGAGTGGCC-3′; the forward primer for HGF: 5′-TTGCGGCCGCATGTGGGTGACCAAACTCC-3′, and the reverse primer for HGF: 5′-GGGAATTCTGACTGTGGTACCTTATATG-3′. The inserts of Rspo1 and HGF were digested with NotI/EcoRI. They were ligated into the pVL1392 vector (BD Pharmingen).
Recombinant Rspo1 and HGF were expressed in Sf9 insect cells using the baculovirus expression system (BaculoGold; BD Pharmingen) and purified to homogeneity from the serum-free supernatant of Sf9 cells infected with their respective viral stocks (multiplicity of infection, 2 × 108/ml) by Talon metal affinity chromatography (BD Clontech). Endotoxin levels of these isolated recombinant proteins were <0.1 U/mg of proteins measured by limulus amebocyte lysate (LAL) from Cape Cod. Eluted proteins were dialyzed into PBS buffer.
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5

Production and Characterization of HPV VLPs

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The double expression plasmid coding for the HPV16 L1 and the L2-E7 fusion was a kind gift of John T. Schiller (NIH). Recombinant baculovirus stocks were generated by co-transfection of Sf9 cells with baculovirus DNA (Baculo-Gold, BD Biosciences) using Lipofectin (Invitrogen), followed by plaque purification [41 (link)]. Sf9 cells were infected at a MOI of ~10 with recombinant HPV16 L1+L2-E7-expressing baculoviruses. After 72 hours, cells were lysed by boiling in SDS sample buffer and analyzed by SDS/PAGE and Coomassie staining or Western blotting. VLP were purified by sucrose/CsCl density gradient centrifugation [42 (link)], adsorbed to glow-discharged carbon-coated copper grids, fixed with 2.5% glutaraldehyde, negatively stained with 1% uranyl acetate and analyzed on a JEOL 1010 transmission electron microscope (TEM) at 80 kV with 30,000 fold magnification.
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6

Recombinant hemagglutinin protein production

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HA gene were cloned downstream of the gp67 secretion signal sequence of the transfer vector pAcGP67A (BD Biosciences, MA, USA). Based on H3 numbering, the corresponding residues were 11–329 (1–327) (HA1) and 330–506 (1–176) (HA2), with a thrombin cleavage site, foldon region, and 6xHis-tag downstream of the HA gene sequence [34] (link). The recombinant HA proteins contained additional plasmid-encoded residues (ADPG for seasonal H1 and ADPGYLLEF for 2009 pdm H1) at their N-terminus and RSLVPR at the C-terminus. All sequences were confirmed by automated sequencing (Macrogen, Seoul, Korea). Plasmids encoding each HA gene were amplified in E. coli strain DH5α and then used to co-transfect Sf9 cells along with linearized baculovirus chromosomal DNA (BaculoGold; BD Biosciences, MA, USA) by the calcium transfection method. The virus was harvested after 5 days, and transfection efficiency was confirmed by PCR after extraction of DNA from 400 µl of virus (cell supernatant). This original virus stock was amplified through repeated rounds of infection.
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7

Baculovirus-mediated Protein Expression

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An insect cell line, Sf9 (RIKEN Cell Bank, Tsukuba, Japan), was incubated at 26.5 °C in Grace’s insect medium (Gibco, Grand Island, NY, USA) supplemented with 10% FBS and 0.26% tryptose phosphate broth (BD, Sparks, MD, USA). The Sf9 cells were co-transfected with BaculoGold, a linearized wild-type Autographa californica nuclear polyhedrosis virus DNA (BD Biosciences, San Diego, CA, USA), and the transfer plasmid, pVL1393-Rn13ORF2F or pVL1393-Rn111ORF2F, by a Lipofectin-mediated method as specified by the manufacturer. The recombinant viruses were designated Ac[Rn13ORF2F] or Ac[Rn111ORF2F]. To achieve large-scale expression, an insect cell line from Trichoplusia ni, BTL-Tn 5B1-4 (Tn5), was infected with the recombinant baculoviruses at an m.o.i. of 10, and the cells were cultured in EX-CELL 405 medium (SAFC Biosciences, Lenexa, KS, USA) at 26.5 °C as described previously [30 (link)].
In addition, the recombinant baculoviruses containing the N-terminal 13 and 111 aa-truncated ORF2 of three other rabbit HEV strains, rbIM004 (AB740222), GDC9 (FJ906895) and GDC46 (FJ906896), were constructed in the same manner.
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8

Recombinant BAX expression in mammalian and insect cells

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HEK293 and Cos7 cells were cultured at 37 °C and 5% CO2 in Dulbecco's modified Eagle's medium, 10% fetal bovine serum (FBS) and 2 mM glutamine. B-cell lines (L1309, L1236, KMH2, L428 and L591) were cultured at 37 °C and 5% CO2 in RPMI 1640 medium, 10% FBS, 2 mM glutamine, 100 IU/ml penicillin and 100 μg/ml streptomycin. Sf9 cells were cultured as suspension cultures in spinner flasks at 27 °C in modified Grace's insect medium (TNM-FH; AppliChem, Darmstadt, Germany), 10% FBS, 50 μg/ml gentamicin and 2.5 μg/ml amphotericin B. For high-level expression of WT and mutant BAX, plasmids pcDNA3.1(+)myc-His/BAX, pcDNA3.1(+)myc-His/BAXC62S or pcDNA3.1(+)myc-His/BAXC126S (12.8 μg cDNA/10 cm2 plate; Supplementary Table 2) were transfected into HEK293 and Cos7 cells by using polyethylenimine (Sigma, Munich, Germany) and FuGENE 6 (Roche, Mannheim, Germany), respectively, for 16 h. For transfection of Sf9 cells, a baculovirus was generated by co-transfection of pVL1393/BAX (1 μg cDNA/25 cm2 flask) and BaculoGold DNA (0.25 μg) using Baculo Gold Transfection Buffer A and B (BD Bioscience). Upon co-transfection, Sf9 cells synthesized BAX as well as viable BAX-coding virus particles. The latter were used to transfect Sf9 cells for large-scale production of BAX.
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9

Recombinant Desmosomal Protein Production

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Plasmids encoding the wild type ectodomains of desmosomal proteins and their mutants were co-transfected and expressed in a baculovirus expression system (BD BaculoGold, BD Biosciences, San Jose, CA, USA) using Sf9 insect cells media containing 5% fetal bovine serum(Invitrogen, Life Technologies Corp., Waltham, MA, USA), according to the manufacturer’s instructions. High-Five insect cells cultured in Express-Five serum-free medium (Life Technologies Corp.) were subsequently infected with baculovirus stocks to produce soluble recombinant antigens releasing in the culture supernatant. Next, antigens were isolated by affinity chromatography using Ni-NTA Superflow cartridges (QIAGEN, Chatsworth, CA), and subsequently dialyzed against Tris-buffered saline buffer containing 5 mM calcium (TBS-Ca2+) and stored at −80°C.
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10

Recombinant MSLN Protein Production

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Full-length cDNA of MSLN was inserted into the baculovirus transfer vector pAcGP67A (RRID:Addgene_41812) of BD BaculoGold (BD Biosciences) in frame with the hexahistidine tag at the C-terminus (Supplementary Table S1). All mutations were made by PCR using the QuikChange mutagenesis kit (Agilent Technologies, Inc.). The plasmid was cotransfected with linearized viral DNA into approximately 2 million Sf9 cells and the culture was gradually amplified to 10 L of cultured insect cells for secretory expression of MSLN. Culture media were collected and concentrated in a diafiltration device (Millipore) against a diafiltration solution containing 25 mmol/L Tris, pH 7.5, 300 mmol/L NaCl, and 10% glycerol. The sample was then mixed with Ni-NTA resin (Qiagen) preequilibrated with the same buffer supplemented with 10 mmol/L imidazole. After washing with the diafiltration buffer supplemented with 50 mmol/L imidazole, bound MSLN was eluted in the presence of 100 mmol/L imidazole. Fractions containing MSLN were pooled and concentrated. MSLN was further purified by size-exclusion chromatography (SEC) using a Superdex 75 column equilibrated with 20 mmol/L Tris, pH 8.0, 100 mmol/L NaCl. Fractions were pooled, concentrated to 16 mg/mL using an Amicon Ultra concentrator (Millipore) with MWCO 30 kDa and stored at −80°C until use.
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