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16 protocols using ab73593

1

Fluorescent Labeling of Retinal Cells

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Carboxylated polystyrene beads (FluoSpheres®) were purchased from Molecular Probes™: 40 nm (8795), 100 nm (F8800), 200 nm (F8809). Dyes for Müller cell and viability staining were obtained from Invitrogen: Hoechst 33342 (H3570), FM® 1-43 (T3163), Mitotracker® Deep Red (M22426), Propidium iodide (P3566). Antibodies against glutamine synthetase (ab73593) and Collagen IV (ab6586) were purchased from Abcam; AlexaFluor® 647 tagged secondary antibody (A27040) was obtained from Invitrogen. Cell culture materials were mostly acquired from Gibco™: CO2 Independent medium (18045088), Neurobasal®-A medium (10888022), Advanced DMEM medium (12491023), B-27® supplement (17504044), Penicillin–streptomycin (15140122), l-Glutamine (25030081), Trypsin–EDTA 0.25% (25200072).
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2

Immunohistochemical Staining of Retinal Tissues

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Cryosections were blocked in 10% horse serum, 0.1% Triton X-100 in PBS (PBT), pH 7.5, for 1 h before adding primary antibodies diluted in blocking solution. The following primary antibodies were used (anti-): pAktSer473 (1:500; Cell Signaling #4060), pS6Ser235/236 (1:500; Cell Signaling #4856), Brn3b (1:500; Chemicon #AB5945), Chx10 (1:200; Santa Cruz #sc-21690), cone-arrestin (1:500; Millipore #AB15282), Pax6 (1:500; Covance Research #PRB-278P), Pten (1:500; Cell Signaling #9559), rhodopsin (1:500; Chemicon #MAB5356), calbindin (1:500; Sigma #C9848), GFAP (1:500; Sigma #G9269), CRALBP (1:500; Abcam #ab15051), glutamine synthetase (1:500; Abcam #ab73593), fibronectin (1:200; Abcam #ab2413), laminin (1:500; Sigma #L9393), RPE65 (1:500; ORIGENE #TA309839), Otx2 (1:500; Abcam #ab21990), N-cadherin (1:200; BD Transduction Labs #610920), ZO-1 (1:100; ThermoFisher Scientific #33-9100) and Sox9 (1:500; Millipore #AB5535). Slides were incubated in primary antibodies overnight at 4°C. The next day, slides were washed three times in PBT before incubating with secondary antibodies conjugated with Alexa Fluor 568 (1:500; Molecular Probes) or Alexa Fluor 488 (1:500; Molecular Probes) for 1 h. Slides were then washed three times in PBT before labelling nuclei with DAPI.
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3

Liver Tissue Immunohistochemistry Protocol

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Following euthanization, liver from wild type mice was harvested and transferred to 4% PFA in PBS. Next, two-micrometer paraffin embedded tissue sections were deparaffinized and rehydrated. Endogenous peroxidase was blocked with three percent H2O2 in methanol. Sections undergoing for GS staining were incubated in cold acetone at −20ºc for 7 minutes and then boiled in TRIS-EDTA for 10 min using a low boiling program in the microwave to break protein cross-links and unmask antigens. Sections undergoing for ASS1 staining were incubated as described above. After pre-incubation with 20% normal horse serum and 0.2% Triton X-100 for 1 hour at RT, sections were incubated with the primary antibodies as follow: GS (1:100, abcam, ab73593, CA, USA); ASS1 (1:100, abcam, ab124465). Sections were washed three times in PBS and incubated with secondary biotinylated IgG at RT for 1.5 hour, washed three times in PBS. Following incubation with avidin-biotin complex, a DAB (Sigma) reaction was performed.
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4

Immunohistochemical Analysis of Glutamine Synthetase

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Slides were deparaffinized with xylene and hydrated through an ethanol gradient and rinsed with phosphate-buffered saline (PBS). Antigen was retrieved by citric acid buffer (pH 6.0). Sections were subsequently treated with 0.3% H2O2 and washed by tris-buffered saline containing 1% Tween 20 (TBST) for 15 min followed by a 60 min blocking with normal goat serum (Vector Laboratories, Burlingame, CA). Slides were incubated with glutamine synthetase, primary antibody (1:100) (ab73593, Abcam, Cambridge, MA) overnight at 4 °C. Slides were washed and incubated with a secondary antibody (1:1000, 1 h) at RT, washed again with PBS and were incubated in Avidin–Biotin Complex (ABC) diluted 1:500 (Vectastain Elite ABC kit; Vector Labs) in PBS for 30 min, and rinsed in PBS. The sections were exposed to diaminobenzidine (DAB Peroxidase substrate kit; Vector Labs) for 30 s. The reaction was quenched by submerging the sections in double distilled water after which slides were counterstained with hematoxylin. Stained sections were mounted on SuperFrost Plus slides (Fisher Scientific, Waltham, MA), air-dried, dehydrated in increasing concentrations of ethanol (50%, 70%, 95%, 100%), cleared overnight in xylene, after which cover slips were applied. Slides were mounted and analyzed sections were imaged with an Olympus VS110 slide scanning microscope.
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5

Immunofluorescent Labeling of Liver Cells

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For immunofluorescence labeling, liver sections were (co-)stained with antibodies directed against GS (1:1000; ab73593, Abcam), SOX9 (1/100; AB5535, Millipore), F4/80 (1:100; MCA497RT, BioRad), HNF4ɑ (1/100; sc6556, Santa Cruz) or CD31 (1:200; MEC13.3, BioLegend). Secondary antibodies were either anti-rabbit AlexaFluor 488; or anti-rabbit, anti-goat or anti-rat AlexaFluor 647 (1:1000, Invitrogen). Hoechst (1:10 000, 62249, Thermo Scientific) was used to counterstain the nuclei. Liver sections were imaged using the Zeiss AxioImager.Z2 microscope.
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6

Immunofluorescence Staining of Cultured Cells

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Cultured cells were fixed using 4% paraformaldehyde (PFA) at room temperature for 20 min. After washing with PBS, cells were incubated with 0.3% Triton X-100 (FUJIFILM Wako) in PBS for 15 min and blocked with PBS containing 10% normal goat serum (NGS) (Thermo Fisher Scientific) for 1 h at room temperature. Cells were then incubated with primary antibodies (chicken anti-vimentin [polyclonal, 1/1000, ab24525, Abcam, Cambridge, UK], rabbit anti-glutamine synthetase [GS] [polyclonal, 1/100, ab73593, Abcam], mouse anti-rhodopsin [Rho] [monoclonal, 1/100, ab5417, Abcam], and rat anti-mouse CD44-PE [monoclonal, 1/100, 1M7, eBioscience, San Diego, CA, USA]) diluted in PBS at 4°C overnight. Next, the cells were incubated with Alexa-conjugated secondary antibodies (Goat anti-Chicken IgY, [H+L], Alexa Fluor™ 488, A-11039, Goat anti-Rabbit IgG [H+L], Alexa Fluor™ 546, A-11035, Goat anti-Mouse IgG [H+L], Alexa Fluor™ 647, A-21235, Thermo Fisher Scientific) diluted in PBS for 1 h at room temperature, and the nuclei were counterstained with 4′,6-diamidino-2-phenylindole (DAPI). Immunofluorescence images were acquired using a BZ-X710 confocal microscope (Keyence, Osaka, Japan). For cell counting, at least three fields were selected per dish.
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7

Histological and Immunohistochemical Analysis

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Histology was performed using tissue fixed in 10% formalin for 24 h, dehydrated, and embedded in paraffin. Sections (7 μm) were cut and stained using hematoxylin and eosin (American Master Tech Scientific). Sections were also incubated with Bouin´s fluid overnight, counterstain with hematoxylin (Sigma), and then stained with Masson-Trichrome stain (American Master Tech Scientific). Immunohistochemistry was performed by staining tissue sections with antibodies against PCNA (biotinylated from Thermofisher MS-106-B; RRID:AB_64272), SOX9 (Abcam ab3697; RRID:AB_304012), glutamine synthetase (Abcam ab73593; RRID:AB_2247588), cytokeratin 19 (Abcam ab15463; RRID:AB_2281021), or phospho-p44/42 MAPK (Thr202/Tyr204) (Cell Signaling Technology #9101). Streptavidin-conjugated horseradish peroxidase (Biogenex) and the substrate 3,3′-diaminobenzidene (Vector Laboratories) were used followed by brief counterstaining with Mayer’s hematoxylin (Sigma).
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8

Immunocytochemical analysis of neural markers

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Immunocytochemical analysis was performed as previously described. Briefly, the cultured cells or neurospheres were fixed in 4% paraformaldehyde-PBS for 30 min, blocked in PBS containing 5% goat serum and 0.3% TritonX-100 at 37 °C for 1 h, and then incubated with one of the following primary antibodies overnight at 4 °C: rabbit anti-GS (1:100, Abcam, ab73593), mouse anti-vimentin (1:75, Abcam, ab8976), rabbit anti-Sox2 (1:100, Abcam, ab92494), mouse anti-nestin (1:100, Abcam, ab6320), mouse anti-rhodopsin (1:50, Abcam, ab5417). Following PBS wash, cells or neurospheres were incubated in fluorophore-conjugated goat anti-mouse IgG (ZSGB-BIO, China) or goat anti-rabbit IgG (Multi Sciences, China) for 2 hours in the dark and then counterstained with 4′,6-diamidino-2-phenylindole (DAPI; Sigma, USA) for five minutes. Fluorescent images were recorded using confocal microscopy (Leica SP8, Germany) or fluorescent microscopy (Leica DM5000B, Germany).
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9

Immunofluorescence Analysis of Retinal Sections

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The eyes were enucleated, fixed with 4% PFA for 30 min at room temperature, and immersed in OCT compound. Then, they were frozen and cut into 8-μm sections using a cryostat (CM1800, Leica Microsystems, Wetzlar, Germany) and mounted onto MAS-coated glass slides (MAS-01, Matsunami, Osaka, Japan). After removing the OCT compound in PBS containing 0.3% Triton X-100 for 15 min, the sections were blocked with 10% NGS in PBS for 1 h. Then, they were incubated with primary antibodies (chicken anti-vimentin [ab24525, Abcam], mouse anti-Rho [1D4, Abcam], FITC-conjugated peanut agglutinin (PNA) [L7381, Sigma-Aldrich], rabbit anti-PSD95 [monoclonal, 1/100, D27E11, Cell Signaling Technology, Danvers, MA, USA], rabbit anti-GS [ab73593, Abcam]) diluted in PBS at 4°C overnight. After washing with PBS, the sections were incubated with Alexa-conjugated secondary antibody (Goat anti-Rabbit IgG [H+L], Alexa Fluor™ 488, A-11008, Goat anti-Rabbit IgG [H+L], Alexa Fluor™ 546, A-11035, Goat anti-Mouse IgG [H+L], Alexa Fluor™ 647, A-21235) diluted in PBS for 1 h at room temperature, and the nuclei were counterstained with DAPI. Images were acquired using a BZ-X710 confocal microscope.
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10

Immunohistochemical Analysis of Retinal Structures

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After fixation with 4% PFA for 30 min at room temperature, the eyes of mice were embedded in paraffin and sliced into 3-μm sections. After removing the paraffin, the sections were activated, blocked, and incubated with primary antibodies (chicken anti-vimentin [ab24525, Abcam], mouse anti-Rho [1D4, Abcam], FITC-conjugated PNA [L7381, Sigma-Aldrich], rabbit anti-PSD95 [D27E11, Cell Signaling Technology, rabbit anti-GS [ab73593, Abcam]) diluted in PBS at 4°C overnight. After washing with PBS, the sections were incubated with Alexa-conjugated secondary antibody (Goat anti-Chicken IgY, [H+L], Alexa Fluor™ 488, A-11039, Goat anti-Rabbit IgG [H+L], Alexa Fluor™ 488, A-11008, Goat anti-Rabbit IgG [H+L], Alexa Fluor™ 546, A-11035, Goat anti-Mouse IgG [H+L], Alexa Fluor™ 647, A-21235) diluted in PBS for 1 h at room temperature, and the nuclei were counterstained with DAPI. Images were acquired using a BZ-X710 confocal microscope. The Rho-positive length in the outer retinal layers was analyzed using ImageJ software. At least three sections, including the optic nerve, were measured per eye, and the average was calculated.
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