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10 protocols using amyloglucosidase

1

Enzymatic Starch Hydrolysis: A Comprehensive Protocol

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Corn starch with a purity of 98.39% was purchased from Miwon (Seoul, Korea). Amyloglucosidase (EC 3.2.1.3), fungal α-amylase (EC 3.2.1.1), cyclodextringlycosyltransferase (EC 2.4.1.19) and branching enzyme (EC 2.4.1.18) activities were provided by commercial food grade preparations (Amyloglucosidase 1100 L declared activity 1100 AGU/g product, Fungamyl® 2500SG declared activity 2500 FAU/g product, Toruzyme® 3.0 L declared activity 3KNU/mL product and Branchzyme declares activity 50000 BEU/mL) supplied by Novozymes (Bagsvaerd, Denmark). All the other chemicals were analytical reagent grade. All solutions and standards were prepared by using deionized water.
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2

Determination of Intracellular Glycogen

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Intracellular glycogen contents would be calculated as previously described (Grundel et al., 2012 (link)), with minor modifications. Synechococcus cells would be collected by centrifugation at 10,000 g for 15 min. The pellet would be washed three times with ddH2O, resuspended with 30% (W/V) KOH, heated at 95°C for 2 h, and finally, ice-cooled ethanol would be added to a final concentration of 70%–75% (V/V). The mixture would be cooled at -20°C overnight and then centrifuged at 15,000 g for 15 min to collect the glycogen precipitation. The glycogen pellet would be washed twice with 70% ethanol (V/V) and 98% ethanol (V/V) successively and then dried by vacuum centrifugation. The glycogen finally obtained was suspended in 100 mM sodium acetate and digested by amyloglucosidase (Novozymes). The glucose contents generated in the glycogen solution were determined with the Sucrose/D-glucose Assay Kit.
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3

Chokeberry Pomace Powder Extrusion Trials

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Extrusion trials were performed using commercial chokeberry (Aronia melanocarpa) pomace powder (CPP) (Aronia Original Naturprodukte GmbH, Dresden, Germany) [20 (link)]. Chemicals and reagents of analytical purity grade were obtained from Merck KGaA (Darmstadt, Germany), unless stated otherwise. Amyloglucosidase (E-AMGDFPD, from Aspergillus niger, 36,000 U/g), α-amylase (E-PANAA, from pig pancreas 100,000 U/g), protease (E-BSPRPD from Bacillus licheniformis 9000 U/g), Celite 545 and endo-arabinanase (EC 3.2.1.99, from A. niger, 9 U/mg) were from Megazyme (Bray, Ireland) and Amberlite FPA53 and Ambersep 200 from Rohm and Haas Europe (Frankfurt, Germany). Thermostable α-amylase (Thermamyl 120 L, EC 3.2.1.1, from B. licheniformis, 120 KNU/g), protease (Alcalase 2.5 L, EC 3.4.21.62, from B. licheniformis, 2.5 AU/g), and Amyloglucosidase (AMG 300 L, EC 3.2.1.3, from A. niger, 300 AGU/g) were a gift from Novozymes, (Bagsværd, Denmark). Rotihydroquant C5 and D used for Karl Fischer titration as well as cyanidin-3-O-glucoside (≥96%), cyanidin chloride (≥97%), 5-caffeoylquinic acid (≥97%), quercetin-3-O-glucoside (≥99%), and quercetin dihydrate (≥99%) used as PP standards were obtained from Carl Roth GmbH & Co. KG (Karlsruhe, Germany). Ultrapure water was used for all experiments.
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4

Coix Seed Fermentation and Bioactives Analysis

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Coix seed was obtained from the local market, which is origin from Chifeng, Inner Mongolia. Lactobacillus plantarum NCU137 powder was preserved at −20 °C in our laboratory. The α-amylase (120,000 U/g) and amyloglucosidase (100,000 U/g) were purchased from Novozymes (Copenhagen, Denmark). Papin (650,000 U/g) was provided by Pangbo Enzyme (Guangxi, China). Antidiuretic hormone (ADH) ELISA kit was obtained from Enzyme-linked Biotechnology (Shanghai, China). Na+/K+ ATPase activity, IL-6, IL-4, IL-10 and IFN-γ ELISA kits were purchased from SenBeiJia (Jiangsu, China). The blood urea nitrogen (BUN) and ammonia kits were provided by Jiancheng (Jiangsu, China). IgA, IgM and IgG ELISA kits were obtained from USCN (Wuhan, China). All other drugs and reagents used were of analytical grade (Sigma, USA).
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5

Enzymatic Hydrolysis and Fermentation of Yam

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After initial experiments, it was determined that 2U/g alpha-amylase (from novozymes, enzyme activity ≥ 150,000 U/mL) was added to the yam slurry and incubated at 90 °C for 60 minutes. When the temperature was lowered to 58 °C, 180 U/g of amyloglucosidase (from novozymes, enzyme activity ≥ 290,000 U/mL) was added and maintained for 6 hours. After the yam juice was cooled to 28 °C, yeast was added for fermentation (each milliliter of yam juice contains 10 6 -10 7 yeast).
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6

Oat Bran Hydrolysis and Analysis

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Oat bran was purchased from Tong Yuan Gong He Co., Ltd. (Yantai, China). TermamylSC and amyloglucosidase were obtained from Novozymes Co., Ltd. (Bagsvaerd, Denmark). Pepsin and trypsin were obtained from Amresco Co., Ltd. (Solon, OH, USA). Lichenase was purchased from Megazyme (Wicklow, Ireland). Mannose, glucose, galactose, xylose, arabinose, and fucose standard were obtained from Sigma-Aldrich Chemical Co. (St. Louis, MO, USA). DEAE52 and SephadexG200 were purchased from GE Healthcare. All other chemicals used were of analytical grade.
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7

Enzymatic Hydrolysis and Antioxidant Assays

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Heat-stable α-amylase (Termamyl 120 L, 120 KNU-S/mL), protease (Alcalase 2.4 L, 4.42 AU/mL), and amyloglucosidase (AMG 300 L, 300 AGU/mL) were purchased from Novozymes (Beijing, China) biotechnology Co., Ltd. Folin—Ciocalteu reagent, 6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid (Trolox), 2,4,6-tripyridyl-s-triazine (TPTZ), 3′,6′-dihydroxy-spiro[isobenzofuran-1(3H),9′-(9H)-xanthene]-3-one disodium salt (FL) and 2,2′-azobis-(2-amidinopropane) dihydrochloride (ABAP) were purchased from Sigma Chemical Co. (St. Louis, MO, USA). Gallic acid, chlorogenic acid, protocatechuic acid, p-hydroxybenzonic acid, vanillic acid, catechin, epicatechin, caffeic acid, sinapic acid, syringic acid, vanilline, isoquercitrin, p-coumaric acid, ferulic acid, quercetin, caffeic acid methyl, ferulic acid methyl were purchased from Aladdin Reagents (Shanghai, China). Fetal bovine serum (FBS), Hanks’ balanced salt solution (HBSS) and Dulbecco’s modified eagle’s medium (DMEM) were purchased from Atlanta Biologicals (Lawrenceville, GA, USA), GibcoLife Technologies (Grand Island, NY, USA) and Thermo Fisher Scientific (Waltham, MA, USA), respectively. HepG2 human liver cancer cells were purchased from the American Type Culture Collection (ATCC) (Rockville, MD, USA). All other chemicals used were of analytical grade or above.
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8

Intracellular Glycogen Quantification in Synechococcus

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Intracellular glycogen content was calculated as previously described69 (link) with minor modifications. Briefly, Synechococcus cells were collected after centrifugation at 10,000 × g for 15 min. The pellet was washed three times with ddH2O, resuspended in 30% (w/v) KOH, heated at 95 °C for 2 h, and finally, ice-cold ethanol was added to a final concentration of 70–75% (v/v). The mixture was cooled overnight at −20 °C, then centrifuged at 10,000 × g for 15 min to collect the glycogen pellet. Glycogen pellets were washed twice consecutively with 70% ethanol (v/v) and 98% ethanol (v/v) and then dried by vacuum centrifugation. The resulting glycogen was suspended in 100 mM sodium acetate and digested with amyloglucosidase (Novozymes). To measure the amount of glucose produced in the glycogen solution, a sucrose/D-glucose assay kit (Megazyme, Ireland) was used.
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9

Kiwifruit Dietary Fiber Isolation

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Wheat starch was provided by Yuanye Biotechnology Co., Ltd. (Shanghai, China). Spectral-grade KBr was provided by Aladdin Reagent Co., Ltd. (Shanghai, China). A leached amylose assay kit and 3,5-dinitrosalicylic acid (DNS) were provided by Beijing Solarbio Biotechnology Co., Ltd. (Beijing, China). Amyloglucosidase (300 AGU/g, AMG 300 L) was provided by Novozymes Biotechnology Co., Ltd. (Shanghai, China). Porcine pancreatic α-amylase (40.4 U/mg) was provided by Sigma-Aldrich (St. Louis, MO, USA). Kiwifruit SDF and IDF were isolated from fresh kiwifruit by our previously described research method [23 (link)].
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10

Glycogen Quantification in Synechococcus

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Glycogen contents of Synechococcus strains were measured as previously introduced with modifications (Grundel et al., 2012 (link)). Synechococcus cells cultivated in BG11 broth under normal condition were collected at day 6. The cells were centrifuged and washed twice with distilled water. The cells were finally resuspended with 400 μl 30% KOH and heated at 95°C for 2 h. Chilled ethanol was added to the lysate solution to the final concentration of 70% (V/V). The mixture was cooled on ice for 4 h, and then centrifuged (14000 g, 15 min, and 4°C). The pellet was washed with 70% ethanol (V/V) and 98% ethanol (V/V) successively, and then dried by vacuum centrifugation. The glycogen finally obtained was suspended in 500 μl 100 mM sodium acetate and digested by 2 mg amyloglucosidase (Novozymes). Glucose contents generated in the glycogen solution was determined with an SBA-40c biosensor analyzer (Shandong Academy of Sciences, China) and used for calculation of the glycogen contents.
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