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Western blots

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Western blots are a widely used analytical technique in molecular biology and biochemistry. They are used to detect and quantify specific proteins within a complex mixture of proteins extracted from cells or tissues. The core function of western blots is to separate proteins by size through gel electrophoresis, transfer them to a membrane, and then detect the target protein using specific antibodies.

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3 protocols using western blots

1

GPNMB Activation Pathway in MDA-MB-231 Cells

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MDA-MB-231 Br cells were seeded at a density of 106 cells per well in 12 well plates and incubated for 24h to allow for cell adhesion. Cells were treated with Ch-1 at 10 µM for 10 min. before the addition of GPNMB (R&D Systems) at 50 ng/mL. After 1 hour of treatment, the cells were washed with cold PBS and cells were trypsinized, using RIPA buffer. Protein lysates were run on Western Blots (Bio-Rad) and ERK 1/2 kinase activation detected using an antibody from Abnova.
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2

Kinase Immunoblotting Protocol

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All chemicals were obtained from Fisher Scientific unless otherwise stated. LB/carbenicillin plates, Tris-Glycine-SDS, and TBST buffers were from Teknova. 4–12% Tris-Glycine gel, Unstained Protein Standards, and Trans-Blot Turbo Ready-To-Assemble (RTA) Mini 0.2 μm PVDF Transfer Kits for Western blots (WB) were from BioRad. The kinases were probed with anti-His Tag Antibody HRP-labeled Mouse Monoclonal IgG (R&D Systems # MAB050H).
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3

Comprehensive STI Screening Protocol

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All participants were offered testing for HIV infection, Chlamydia trachomatis, Neisseria gonorrhea, and syphilis at baseline, 6- and 12-months. HIV tests were performed using enzyme immunoassays (Vironostika HIV-1 Microelisa System, bioMerieux, Durham, NC) or rapid tests (Oraquik) with confirmatory Western blots (Bio-Rad, Redmond, WA). Per clinic routine, participants also received pooled HIV RNA testing (Procleix HIV-1 Discriminatory Assay, Gen-Probe Inc., San Diego, CA) (24 (link)). Men testing positive by HIV RNA alone underwent subsequent confirmatory testing. We used culture to test for rectal gonorrhea, pharyngeal gonorrhea, and rectal chlamydial infection, and Aptima Combo2 (Gen-Probe Inc., San Diego, CA) to test for urethral gonorrhea and chlamydial infection. We tested for syphilis using RPR with confirmatory TPPA. Our composite endpoint of any HIV/STI included a new diagnosis of HIV, syphilis, or chlamydia or gonorrhea at any anatomical site.
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