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17 protocols using cystatin c

1

Urinary Biomarkers Measured in Mice

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Urine was collected by metabolic caging to measure the urinary albumin concentration and to calculate the urinary albumin excretion rate (UAER). Mice were single-housed in metabolic cages for 18 hours on days 2-3, 6-7, 16-17, and 36-37. Urinary markers were measured by ELISA: albumin (Bethyl Laboratories, cat.no. E90-134), Cystatin C (R&D systems, Minneapolis, MN Cat. number MSCTCO) and TNFR1 (R&D systems, Minneapolis MN Cat. number MRT10). Urinary creatinine was measured by high-performance liquid chromatography (HPLC). Creatinine was measured in serum by acetonitrile deproteinization, followed by isocratic, cation exchange HPLC as previously described [20 (link)].
Blood plasma was prepared from blood samples collected on days 7, 14, 21, 28, and 42. Serum Amyloid P (SAP) was measured by ELISA (Genway, San Diego, CA). Cystatin C was measured using ELISA (R&D systems, Minneapolis, MN Cat. number MSCTCO).
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2

Characterization of Autoantibodies in Mouse Serum

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Mouse blood was collected from the inferior vena cava at the end of the PV-loop procedure. After incubation for 1–2 h at room temperature, the serum was prepared by centrifugation at 300 ×g followed by centrifugation at 16 000 ×g for 20 min, aliquoted and kept frozen at −80 °C. Antibodies to β2GPI were measured by ELISA using 96-well plates coated with human β2GPI supplied with the β2GPI-IgG ELISA kit (Inova Diagnostics, San Diego, CA, USA). Serum samples were diluted 1 : 50 with the sample diluent from the kit, incubated for 30 min on a plate, probed with HRP-conjugated donkey anti-mouse IgG (ab7061; Abcam, Cambridge, MA, USA) and detected with tetramethylbenzidine (TMB) substrate. Each set of measurements contained serial dilutions of mouse monoclonal anti-human β2GPI IgG (Alpha Diagnostic, San Antonio, TX, USA) prepared in the sample diluent and used to generate a standard curve. Mouse anti-dsDNA total Ig (Alpha Diagnostic) and Cystatin C (R&D Systems, Minneapolis, MN, USA) ELISA measurements were performed according to the manufacturer’s instructions. The blood urea nitrogen (BUN) colorimetric detection kit used was from B-Bridge International (Santa Clara, CA, USA). Total cholesterol was measured with the Amplex Red cholesterol assay kit (Invitrogen, Carlsbad, CA, USA) and the triglyceride quantification kit was from Abcam.
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3

Diabetic Kidney Dysfunction in Mice

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Eight to twelve week-old male wild type and PAR-1 deficient mice (8 per group) were injected with streptozotocin (50 mg/kg body weight) for 5 consecutive days to induce diabetes. Eight age-matched, untreated wild type and PAR-1 deficient mice served as a non-diabetic control groups. Three months after streptozotocin injections, mice were sacrificed, and blood, urine and kidneys were harvested for further analysis. Blood glucose levels were measured from tail vein blood using a Bayer Contour glucose meter. Plasma cystatin C (R&D systems) and urine albumin (Bethyl laboratories) levels were determined by ELISA according to the manufacturer’s instructions. Urine creatinine levels were determined using an enzymatic mouse creatinine assay kit (CrystalChem), according to the manufacturer’s instructions.
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4

Characterization of SUPERGUMTM EM 10

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GA used was SUPERGUMTMEM10, Lot 101008, 1.1.11 (San – Ei Gen F. F. I.; Sanwa-Cho, Toyonaka, Osaka, Japan); aqueous solutions were prepared freshly every day. The chemical properties of GA have been fully reported before [20] (link), [21] . The SUPERGUMTM EM 10 used was characterized by size fractionation followed by multiple angle laser light scattering (GPC-MALLS) to give its molecular profile. The average molecular weight was 3.43×106, and the content of arabinogalactan protein (AGP) 26.4%. Adenine was obtained from Sigma (St. Louis, MO, USA). Creatinine, urea and protein kits were bought from Human GmbH (Mannheim, Germany) and SOD, CAT and AO kits from Randox (Antrim, UK). TAC kits were from Cayman Chemical, Ann Arbor, MI, USA. Nephrin was obtained from Novatein Biosciences, Cambridge, MA, USA, tumor necrosis factor α (TNF α) from Cayman Chemical, Ann Arbor, MI, USA, 8-isoprostane and 8-oxo-2'-deoxyguanosine (8-OHDG) from Statok Kino, Shizuoka, Japan, adiponectin from Cayman Chemical, Ann Arbor, MI, USA, and cystatin C from R &D Systems, Abingdon, UK.
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5

Biomarker Quantification in Serum and Urine

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ELISA analyses for KIM-1 (Cat no. MKM100, R&D Systems), NGAL (Cat no. MLCN20, R&D Systems), Cystatin C (Cat no. MSCTC0, R&D Systems), and Albumin (Cat no. E99-134, Bethyl Laboratories) were performed on serum or urine following the manufacturer’s instructions. Urine and serum creatinine were measured by LC-MS/MS. Data were expressed as nanograms per milliliter or were normalized to urine creatinine and expressed as nanograms per milligram creatinine.
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6

Urine Biomarker Assay Protocol

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Mouse specific osteopontin (OPN), pro-epidermal growth factor (EGF), neutrophil gelatinase-associated lipocalin (NGAL), Kidney Injury Molecule-1(KIM-1), Cystatin C and clusterin ELISA assay kits were purchased from R&D Systems, Inc. (Minneapolis, MN); albumin ELISA kit was from Bethy Laboratories, Inc.( Montgomery, TX); and pancreatic Amylase α2(AMY2) and Y Glutamytransferase 1(GGT-1) kits were from BlueGene, Biotech(Putuo District, Shanghai). Urine aliquots (10 µL) from each PMO and saline treated mouse at each time point were used in duplicate in each assay following the manufacturer’s recommended protocols.
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7

Murine Urinary Biomarker Quantification

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ELISA analyses for Cystatin C (R&D Systems, Minneapolis, MN, USA), and Creatinine (Cayman Chemical, Ann Arbor, MI, USA) were then performed with murine 24 h urine by following the manufacturer’s instructions.
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8

Biomarkers for Mouse Kidney Injury

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Mouse specific osteopontin (OPN), pro-epidermal growth factor (EGF), neutrophil gelatinase-associated lipocalin (NGAL), Kidney Injury Molecule-1 (KIM-1), Cystatin C and clusterin ELISA assay kits were purchased from R&D Systems, Inc. (Minneapolis, MN); albumin ELISA kit was from Bethy Laboratories, Inc. (Montgomery, TX); and pancreatic amylase α2 (AMY2) and γ glutamytransferase 1 (GGT-1) kits were from BlueGene, Biotech (Putuo District, Shanghai). Urine aliquots (10 μL) from each PMO and saline treated mouse at each time point were used in duplicate in each assay following the manufacturer's recommended protocols.
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9

Annexin A2 and Cystatin C Effects on Myofibroblasts and Osteoblasts

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VICs were seeded on hydrogels (E≃5 kPa, Supplemental Figure 1) and treated with either human recombinant annexin A2 (R&D Systems) or cystatin C (R&D Systems) at various concentrations. For inhibition studies, cells were treated with a known p38 MAPK inhibitor, SB203580 (Selleck Chemicals), at the previously optimized concentration of 20 μM 21 (link). After immunostaining (refer to the following section), gel samples were imaged on a glass-bottom 24 well plate (Cellvis) using either an Operetta High-Content Imaging System (Perkin Elmer, Part no. HH12000000) or Nikon Eclipse Ti2-E. Sample images were analyzed by adapting a publicly sourced MATLAB code from GitHub 26 . Myofibroblast activation was assessed by quantifying α-SMA gradient mean intensity values and osteoblast-like differentiation was measured by quantifying RUNX2 nuclear intensity normalized to RUNX2 cell mask intensity. Individual cell values were analyzed for at least 5 images per gel, with a minimum of two gels per condition.
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10

Serum and Urine Biomarkers in Unilateral Nephrectomy

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Serum was collected via retro‐orbital blood draw at baseline and on study Day 1 (1 day after unilateral nephrectomy), Day 27 (pretreatment), Day 29 (posttreatment), and collected at sacrifice via cardiac puncture on Day 35. Serum was processed as previously described.31 Urine, when available was collected noninvasively at the same time points and via bladder puncture at sacrifice on Day 35. Assays for serum BUN (BioAssay Systems QuantiChrom™ Urea Assay Kit), enzymatic creatinine (Pointe Scientific Creatinine Enzymatic Reagent Kit), cystatin C (R&D Systems, Minneapolis, MN), and urine kidney injury molecule‐1 (KIM‐1) (R&D Systems, Minneapolis, MN) and neutrophil gelatinase‐associated lipocalin (NGAL) (R&D Systems, Minneapolis, MN) were performed per manufacturer's instructions.
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