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10 protocols using nigericin

1

Isolation and Activation of Bone Marrow-Derived Macrophages

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BMDMs were obtained by culturing mouse bone marrow cells in culture media containing a 1:10 dilution of supernatant from the fibroblastic cell line CMG 14-12 as a source of macrophage colony-stimulating factor (86 ), a mitogenic factor for BMDMs, for 4-5 days in a 15-cm dish as previously described (85 (link)). Briefly, nonadherent cells were removed by vigorous washes with PBS, and adherent BMDMs were detached with trypsin-EDTA and cultured in culture media containing a 1:10 dilution of CMG for various experiments.
For all in vitro pharmacology experiments except otherwise specified, cells were pre-treated with vehicle (0.1% DMSO, final concentration) or inhibitors (in 0.1% DMSO, final concentration) for 1 hour before stimulation with the indicated ligand or ligands. Protein expression was analyzed by ELISA or Western blot as described below. To activate the NLRP3 inflammasome, BMDMs were plated at 104 cells per well on a 96-well plate or 106 cells per well on a 6-well plate overnight. Cells were primed with LPS and then with 15 μM nigericin (AdipoGen) as indicated, and conditioned media were collected for the analysis of IL-1β and LDH.
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2

Lentiviral Transduction of J774A.1 Cells

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Lentiviral vectors pGLV5-siiD (EF-1aF/GFP&Puro) were designed, constructed, amplified, and purified by GenePharma (Shanghai, China). The SiiD lentivirus Lv-SiiD and negative control lentivirus Lv-NC at a titer of approximately 1 × 109 infectious units/mL were provided by GenePharma. Lentivirus was diluted 10-fold with complete DMEM and used to infect J774A.1 cells cultured in plates. The cells were incubated at 37°C with polybrene (GenePharma, final concentration of 5 μg/mL) for 24 h. After culturing in fresh complete DMEM for another 48 h, the cells were pre-treated with LPS and stimulated with the indicated concentration of ATP (1.25 mM, Thermo Scientific), or nigericin (10 μM, AdipoGen) for 1 h, or MSU crystals (200 μg/mL, AdipoGen) for 6 h. The supernatants and cell lysates were collected for western blotting or ELISA as described above.
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3

Inflammasome Activation and Cell Death Imaging

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Asc-citrine, WT, and Nlrp3CA/+;Gsdmd−/− BMDMs were plated at 104 cells per well on a 16-well glass plate overnight. Cells were primed with LPS for 3 hours and pretreated or not with CuET for 15 minutes before adding 15 μM nigericin (AdipoGen, CA) for 30 minutes. Cells were washed with PBS and fixed with 4% polyformalin buffer for 10 minutes at room temperature. For immunostaining, WT and Nlrp3CA/+;Gsdmd−/− BMDMs were permeabilized with 0.2% Triton in PBS for 20 minutes, blocked with 0.2% Triton, 1% BSA, and CD61 antibody (1:1000; Alexa Fluor 647, BD, NJ) in PBS for 30 minutes, and were incubated with ASC antibody (1:1000; clone 2EI-7, EMD Millipore, MA) overnight at 4°C in blocking buffer, followed by incubation with secondary antibody (Alexa Fluor 594, Life Technologies) for 30 minutes. Cells were counterstained with Fluoro-gel II containing DAPI (Fluoro-Gel, Fisher Scientific Intl INC, PA). Asc-citrine photographs were taken using ZEISS microscopy (Carl Zeiss Industrial Metrology, MN). ASC immunostaining images were taken using a Leica inverted microscope with a TCS SPEII confocal module and processed using LAS X software (Leica Microsystems Inc, IL). Quantification of ASC specks was carried out using ImageJ.
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4

Investigating Oxidative Stress Pathways

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We purchased 1,25(OH)2VD3 from Toronto Research Chemicals (North York, Ontario, Canada), nigericin from AdipoGen Life Sciences (San Diego, CA, USA), N-acetyl-l-cysteine (NAC) from Sigma-Aldrich (St. Louis, MO, USA), zinc protoporphyrin (ZnPP) from MedChemExpress (Monmouth junction, NJ, USA), anti-IL-1β antibody (MAB601) from R&D Systems (Minneapolis, MN, USA), anti-caspase-1 (D7F10), anti-NRF2 (D1Z9C), anti–HO–1 (D60G11), anti-Lamin A/C (2032), and horseradish peroxidase (HRP)-conjugated anti-rabbit IgG antibodies from Cell Signaling Technology (Danvers, MA, USA), anti-beta actin antibody from Abcam (Cambridge, MA, USA), anti-ASC (N-15) antibody from Santa Cruz Biotechnology (Santa Cruz, CA, USA), anti-GAPDH (6C5) from Calbiochem (San Diego, CA, USA), 4′,6-diamidino-2-phenylindole (DAPI) from Dojindo Laboratories (Kumamoto, Japan), Alexa Fluor 594-conjugated anti-mouse antibodies from Thermo Fisher Scientific (Waltham, MA, USA), and CM-H2DCFDA from Invitrogen (Carlsbad, CA, USA). All other chemicals were of the highest available commercial grade.
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5

NLRP3 Inflammasome Activation in LPS-Stimulated Cells

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LPS from Escherichia coli O111:B4 was purchased from Sigma–Aldrich. The cathepsin B inhibitor Ca074Me was obtained from the Peptide Institute. Nigericin, ionomycin, and the NLRP3 inhibitor, MCC950, were obtained from AdipoGen Life Sciences. The caspase-1 inhibitor Z-YVAD-fmk and pan-caspase inhibitor Z-VAD-fmk were purchased from Abcam. The actin polymerization inhibitor cytochalasin D was obtained from Cayman Chemical and was used as a phagocytosis inhibitor. All inhibitors were dissolved in DMSO.
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6

Molecular Mechanisms of Inflammasome Activation

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ATP, MG132, chloroquine, cycloheximide, phorbol myristate acetate, LPS (Escherichia coli, 055:B5), peptidoglycan (PGN), poly(I:C), 3-MA, anti-TRIM31, anti-Myc and anti-Flag were from Sigma-Aldrich (St Louis, MO); Dextran sulfate sodium (DSS, 36-50 kDa) was bought from MP Biomeicals (Aurora, OH). Imject Alum was from Thermo Scientific; IL-1β and TNF-α were from PeproTech (Rocky Hill, NJ); Flagellin and poly(dA:dT) were from Invivogen (San Diego, CA). Nigericin, anti-caspase-1 p45&p20, anti-NLRP3 and anti-ASC were from AdipoGen; anti-hemagglutinin (HA), anti-Ub, anti-β-actin, protein G agarose used for IP and horseradish peroxidase-conjugated secondary antibodies were from Santa Cruz Biotechnology (Santa Cruz, CA); anti-IL-1β p31&p17, anti-p-JNK, anti-p-p38, anti-p-ERK, anti-JNK, anti-p38, anti-ERK1/2, anti-p-IκBα, anti-K48-ub and anti-K63-ub were from Cell Signaling Technology (Beverly, MA); anti-AIM2 and anti-NLRC4 were from Abcam (Cambridge, MA).
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7

Quantifying ASC Speck Formation

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ASC-citrine-WT BMMs were plated at 104 cells per well on a 16-well glass plate overnight. Cells were primed with LPS for 3 hr followed by 15 μM nigericin (AdipoGen, CA, USA) for 30 min or the indicated doxorubicin concentrations for 16 hr. Cells were washed with PBS, fixed with 4% paraformaldehyde buffer for 10 min at room temperature, then counterstained with Fluoro-gel II containing DAPI (Fluoro-Gel, Fisher Scientific Intl INC, PA, USA). ASC-citrine photographs were taken using ZEISS microscopy (Carl ZEISS Industrial Metrology, MN, USA). Quantification of ASC specks was carried out using ImageJ.
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8

Isolation and Priming of Primary Murine Peritoneal Macrophages

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Primary peritoneal macrophages (PMs) were obtained from C57BL/6N mice intraperitoneally injected with 2 mL of 3% fluid thioglycollate medium (Merck, Germany) three days before cell collection. PMs were cultured in 3.5 mm dishes (Nunc, ThermoFisher Scientific, USA) or 6-well plates (Nunc, ThermoFisher Scientific, USA) with RPMI 1640 medium (Hyclone, Cytiva, USA) containing 10% fetal bovine serum (FBS) (Gibco, ThermoFisher Scientific, USA) and 1% penicillin-streptomycin Solution (Cytiva, USA). After 3 hours, the medium was replaced by a fresh RPMI 1640 medium (Hyclone, Cytiva, USA), after which the cells were cultured overnight. The medium was changed to opti-MEM (Gibco, ThermoFisher Scientific, USA) for 1 hour. Cells were then transfected with CLP/siRNA for 48 hours. After that, the cells were primed with ultrapure lipopolysaccharide (LPS) (AdipoGen, Switzerland) for 2 hours and subsequently stimulated with nigericin (20 μM) (AdipoGen, Switzerland) for 45 min. Finally, cell extracts and precipitated supernatants were analyzed by Western blot (WB).
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9

Murine Bone-Derived Macrophage Isolation

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BMDMs were obtained by culturing mouse bone marrow cells in culture media containing a 1:10 dilution of supernatant from the fibroblastic cell line CMG 14-12 as a source of macrophage colony-stimulating factor 74 , a mitogenic factor for BMDMs, for 4-5 days in a 15-cm dish as previously described 73 . Briefly, nonadherent cells were removed by vigorous washes with PBS, and adherent BMDMs were detached with trypsin-EDTA and cultured in culture media containing a 1:10 dilution of CMG for various experiments.
For all in vitro pharmacology experiments except otherwise specified, cells were pre-treated with vehicle (0.1% DMSO, final concentration) or inhibitors (in 0.1% DMSO, final concentration) for 1 hour before stimulation with the indicated ligand or ligands. Protein expression was analyzed by ELISA or Western blot. To activate the NLRP3 inflammasome, BMDMs were plated at 10 4 cells per well on a 96-well plate or 10 6 cells per well on a 6-well plate overnight. Cells were primed with LPS and then with 15 μM nigericin (AdipoGen) as indicated, and conditioned media were collected for the analysis of IL-1β and LDH.
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10

Inflammasome Activation Quantification

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Asc-citrine BMDMs were plated at 10 4 cells per well on a 16-well glass plate overnight. Cells were primed with LPS for 3 hours and pretreated or not with CuET for 15 minutes before adding 15 μM nigericin (AdipoGen, CA) for 30 minutes. Cells were washed with PBS and fixed with 4% polyformalin buffer for 10 minutes at room temperature. Photographs were taken using ZEISS microscopy (Carl Zeiss Industrial Metrology, MN). Quantification of ASC specks was carried out using ImageJ.
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