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7 protocols using d xylose

1

Cellulose Valorization with Supported Catalysts

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Cellulose was purchased from Merck & Co., Inc. Charcoal-supported Pd, Pt, Rh, and Ru (5 wt% metal loading; denoted as Pd/C, Pt/C, Rh/C, and Ru/C, respectively), d-glucose, d-xylose, tetrahydrofuran (THF), 1-propanol, and 1-butanol were purchased from FUJIFILM Wako Pure Chemical Corporation. Xylan (from Maple) was purchased from Tokyo Chemical Industry Co., Ltd.
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2

Quantifying Xylose and Lysine in Samples

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All chemical and chromatographic reagents used were of HPLC or LC/MS grade. Pyridoxamine dihydrochloride monohydrate was obtained from Tokyo Chemical Industry (Tokyo, Japan). D(+)-Xylose, L(+)-lysine monohydrochloride, acetonitrile (ACN), and 1 M ammonium formate solution were obtained from Wako Pure Chemical Industry (Osaka, Japan). D-[1-13C]xylose (99%) was obtained from Cambridge Isotope Laboratories, Inc. (MA, USA). Other reagents were obtained from Kanto Kagaku (Tokyo, Japan).
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3

Synthesis and Characterization of Cyclodextrin Derivatives

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FPB-βCyD, PB-βCyD, and 1 were synthesised according to our previous reports.5–7 (link) Dimethyl sulfoxide (DMSO, Luminasol®, Dojindo Laboratories), sodium chloride (Fujifilm Wako Chemicals), disodium hydrogen phosphate (Fujifilm Wako Chemicals), sodium hydrogen carbonate (Fujifilm Wako Chemicals), sodium carbonate (Fujifilm Wako Chemicals), d-fructose (Fujifilm Wako Chemicals), d-glucose (Fujifilm Wako Chemicals), d-galactose (Fujifilm Wako Chemicals), d-mannose (Fujifilm Wako Chemicals), d-ribose (Fujifilm Wako Chemicals), d-xylose (Fujifilm Wako Chemicals), hydrogen chloride aq. (Fujifilm Wako Chemicals), 50% sodium hydroxide solution (super special grade, Fujifilm Wako Chemicals), and Milli-Q water were used for spectroscopic measurements.
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4

Catalytic valorization of biomass-derived compounds

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d(+)‐glucose (98 %, Kishida), d(−)‐fructose (99 %, Wako), d(+)‐mannose (99 %, Wako), d(+)‐xylose (99 %, Wako), dl‐glycelaldehyde (>90 %, Sigma‐Aldrich), glycolic acid (97 %, Wako), formic acid (98 %, Wako), hydrogen peroxide (30 %, Wako), and benzoic acid (99.5 %, Wako) were used for the reactions and the analysis. Calcium oxide (CaO, 99.9 %, Wako), hydroxide (Ca(OH)2, 90 %, Kishida), carbonate (CaCO3, 99.95 %, Wako), and phosphate (Ca3(PO4)2, 98 %, Wako) were used as catalysts. Other metal oxides, MgO (99.9 %, Wako), SrO (95 %, Kishida), BaO (90 %, Wako), Sc2O3 (99.9 %, Kojundo), Y2O3 (99.99 %, Wako), La2O3 (99.99 %, Wako), CeO2 (99.9 %, Wako), TiO2 (anatase, 98.5 %, Wako), Nb2O5 (99.9 %, Kojundo), Ta2O5 (99.9 %, Wako), Cr2O3 (Wako), SnO2 (98 %, Wako) and ZnO (99.9 %, Wako) were also used as catalysts. Mg‐Al hydrotalcite (Mg/Al=3) was prepared by a conventional coprecipitation method[39] using Mg(NO3)2 ⋅ 6H2O (99 %, Wako), Al(NO3)3 ⋅ 9H2O (98 %, Wako), Na2CO3 (99.5 %, Kishida) and NaOH (98 %, Kishida).
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5

Phenol-Sulfuric Acid Method for Pentose and Hexose

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The methods of pentose (D(+)-Xylose, Wako, Osaka, Japan) and hexose (D-(+)-Glucose, Sigma-Aldrich, St. Louis, MO, USA) measurement were modified based on the phenol-sulfuric acid method of Nielsen [23 ]. Briefly, the sample was extracted by deionized water at 95 °C for 30 min and cooled down to room temperature before use. After that, 1 mL 5% phenol solution and 5 mL sulfuric acid were added to PWMC, FPW, and PP water extracts. After incubation for 15 min, the absorbance was measured at 480 nm with U-2900 Spectrophotometer (Hitachi, Tokyo, Japan) for the standard curveof xylose and glucose
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6

Enzymatic Characterization of Sucrose Phosphorylase

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d-Allose, d-glucose, α-Glc1P, d-gluconic acid, lactose, d-mannose, and d-xylose were purchased from Fujifilm Wako Pure Chemical (Osaka, Japan); N-acetyl-d-glucosamine, d-galactose, and sucrose were purchased from Nacalai Tesque (Kyoto, Japan); d-glucosamine was purchased from Tokyo Chemical Industry (Tokyo, Japan); cellobiose, d-galacturonic acid, and d-glucuronic acid were purchased from Sigma (St. Louis, MO, USA). β-(1 → 4)-Mannobiose was prepared as previously described29 (link). Lactoless L3 (β-galactosidase) was provided by Daiwa Kasei (Shiga, Japan). SP from Bifidobacterium longum was prepared according to the method described by Nishimoto and Kitaoka5 (link). One unit of SP was defined as the amount of enzyme required to phosphorolyze 1 μmol of sucrose in 1 min. SP activity was measured as follows: a reaction mixture (50 μL) containing appropriate concentration of enzyme, 20 mM sucrose, 40 mM sodium phosphate, 100 mM 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES)-NaOH buffer (pH 7.0), and 0.2 mg/mL bovine serum albumin (BSA, Nacalai Tesque) was incubated at 37 °C for 10 min. The enzymatic reaction was terminated by incubating the sample at 80 °C for 3 min, and the liberated d-fructose was measured using a d-Fructose/d-Glucose Assay Kit (Megazyme, Brey, Ireland).
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7

Lanthanide-Assisted Xylose Separation

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All materials and chemicals were of analytical grade and used without further purification. A strong-acid cation-exchange resin, AG 50W-X4 (hydrogen ion form; crosslinkage, 4%; particle size, 0.075 -0.150 mm; total cation exchange capacity, 1.1 meq/mL) was purchased from Bio-Rad Laboratories (Hercules, CA, USA). LaCl3•6H2O, CeCl3•6H2O, SmCl3•6H2O, Gd(NO3)3•6H2O, HoCl3•6H2O, and YbCl3•6H2O were purchased from Wako Pure Chemical Industries (Osaka, Japan). Nd(NO3)3•6H2O was purchased from Junsei Chemical (Tokyo, Japan). D-(+)-Xylose, xylitol, glycerol and all other chemicals used in this study were purchased from Wako Pure Chemical Industries. Ultra-pure water (Milli-Q, Integral MT5L; Nippon Millipore, Tokyo, Japan) was used for all experimental work.
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