The largest database of trusted experimental protocols

43 protocols using ve cadherin

1

Embryonic Cell Characterization by FACS

Check if the same lab product or an alternative is used in the 5 most similar protocols
FACS analysis was performed using BD FACSAria II (BD Biosciences, San Diego, CA, USA) as described previously [9 (link), 17 (link)]. Stage specific embryos were separated from yolk sacs, and digested with 0.25% trypsin (Hyclone) to obtain a single cell suspension as previously described [11 (link)]. Cells were incubated with antibody cocktails for 30 minutes at 4°C, washed, and re-suspended in PBS with 2% FBS. Cocktails of antibodies CD31-APC (eBiosciences 25–0311), and VE-cadherin (BD Pharmigen) were used in this study, washed and re-suspended in FACS buffer (PBS/1%FBS). Cells were analyzed or sorted using FACSAria II (BD Biosciences). FACS data were quantified using data obtained from three independent experiments. AnnexinV-FITC labeling was performed according to the manufacturer’s protocol.
+ Open protocol
+ Expand
2

Western Blot Analysis of Cellular Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell lysates were centrifuged at 12,000 rpm for 7 min at 4 °C. Protein concentrations were determined using a Pierce bicinchoninic acid (BCA) protein assay (Thermo Fisher Scientific, Waltham, MA, USA), and 10–15 μg of protein was loaded per lane onto 10% SDS–polyacrylamide gels, and the separated proteins were transferred onto nitrocellulose membranes (Millipore, Billerica, MA, USA). The membranes were subsequently blocked with 5% bovine serum albumin (BSA) with 0.1% Tween-20 and incubated with the appropriate primary antibodies overnight at 4 °C ((fibronectin: BD Pharmigen), (CD31, VE-cadherin, β-actin, total and phospho-cofilin, total and phospho-cell division cycle (cdc) 42, Rho A, total and phospho-smad2/3: Cell Signaling, Danvers, MA, USA), (total and phospho-NF-κB p65, and total and phospho-inhibitor of NF (I)κBα: Santa Cruz Biotechnology, Dallas, TX, USA); (α-smooth muscle actin (SMA) and TGF-βR1: Abcam, Cambridge, UK)). The bands were later incubated with anti-rabbit or anti-mouse peroxidase-conjugated secondary antibodies (Thermo Fisher Scientific). The protein bands were visualized using an enhanced chemiluminescence (ECL) kit (Advansta, Menlo Park, CA, USA) and quantified using the ImageJ(1.52v, NIH)software.
+ Open protocol
+ Expand
3

Fluorescence Microscopy of Endothelial Junctions

Check if the same lab product or an alternative is used in the 5 most similar protocols
The fluorescence microscopy analyses of VE-cadherin, β-catenin, and phospho-β-catenin Ser33/Ser37/Thr41  were performed on the HUVECs in different conditions and times as indicated in Results. Briefly, after cells were fixed in 4% paraformaldehyde and permeabilized with 0.1% Triton X-100, cells were incubated with polyclonal antibodies against VE-cadherin (1:100; BD Transduction Laboratories), β-catenin (1:100; BD Transduction Laboratories), and phospho-β-catenin Ser33/Ser37/Thr41 (1:50; Cell Signaling Technology) overnight at 4°C, then washed and incubated with secondary Alexa Fluor–conjugated antibodies (1:300; Vector Laboratories) for 45 min at room temperature. After washing, the samples were mounted in VECTASHIELD (Vector Laboratories) and analyzed by fluorescence microscopy.
+ Open protocol
+ Expand
4

Western Blot Analysis of Cell Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
For western blotting, ZO-1, VE-cadherin (BD Transduction Laboratories, Franklin Lakes, NJ), p-FRAP (p-mTOR), p-Akt1/2/3, Akt1/2/3, p-ERK, ERK, p-AMPK, AMPK, p62 (Santa Cruz), LC3 (MBL, Woburn, MA), and mTOR (GeneTex, Inc., Irvine, CA) were detected using antibodies diluted 1:1,000, followed by an HRP-conjugated anti-mouse or anti-rabbit immunoglobulin antibody diluted 1:6,000 (Leadgene Biomedical, Taiwan). β-actin antibodies (Sigma-Aldrich) were used at a 1:10,000 dilution as an internal control. Bound HRP-conjugated antibodies were detected using LuminataTM Crescendo Western HRP substrate (Millipore). The results of western blotting were quantified using ImageJ software.
+ Open protocol
+ Expand
5

Immunostaining of Mouse Embryo Sections

Check if the same lab product or an alternative is used in the 5 most similar protocols
Embryos were fixed in 4% PFA at 4° C overnight followed by PBS washes. Subsequently, embryos were transferred through a 15% and 30% sucrose gradation followed by embedding in Tissue-Tek O.C.T. compound (Thermo scientific, Waltham, MA USA). 10 μM sections were prepared using Leica cryostat. For immune-staining sections were fixed in 4% PFA for 5 min on ice, washed in a 1X PBS, blocked in serum containing 3% goat serum, 3% bovine serum albumin and 0.1% Triton X-100 followed by incubation with primary antibodies overnight at 4° C. Primary antibodies used were GFP (1:200, ab13970), Runx1 (1:200, ab92336), CD41 (1:300, ab33661), CD31 (1:100, 553370, BD Pharmingen), Vegfr2/Flk1 (1:100, sc48161) and VE-cadherin (1:100, sc-6458). Secondary antibodies, anti-rabbit biotin, anti-rat biotin, anti-goat biotin and anti-chicken Alexa Fluor-488 (Life Technology) were used at 1:200 concentrations. For biotinylated antibodies signal was amplified using ABC (Vectastatin) and cy3-Tyramide amplification kit (Perkin Elmer). Images were taken using a Zeiss LSM 700 Upright confocal microscope.
+ Open protocol
+ Expand
6

Cell Immunofluorescence Staining Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Thirty minutes after treatment with patient plasma, cells were fixed in 2.5% paraformaldehyde, permeabilized, and incubated with primary antibody (VE-cadherin; BD Bioscience, San Diego, CA), followed by with secondary Alexa-antibody and phalloidin [18 (link)].
+ Open protocol
+ Expand
7

Quantifying Apoptosis via TUNEL Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
To detect DNA fragmentation in apoptotic cells, terminal TUNEL was performed as previously described19 (link). A Click-iT TUNEL Alexa Fluor 594 Imaging Assay was used following the manufacturer instructions (Life Technologies). Briefly cells were fixed using 4% paraformaldehyde in PBS for 15 min and followed by a permeabilization step with 0.25% Triton®X-100 for 20 min. Cells were then treated with terminal deoxynucleotidyl transferase for 60 min at 37 °C to allow the incorporation of modified dUTPs at the 3′-OH ends of fragmented DNA, followed by a Click-iT® reaction for 30 min at 37 °C to label ends with a fluorescent dye through click chemistry. Afterwards cells were washed gently to eliminate excess of reagents and cells were counterstained with DAPI and VE-Cadherin (BD Biosciences) to visualise the cell edges and nuclei, respectively. Images were generated with a Nikon Spinning disk confocal microscope using a ×20 objective and Nikon software NIS elements. The percentage of TUNEL positive cells was calculated in 16 selected fields of view for each condition, covering ~2000–4000 cells to estimate the level of apoptosis.
+ Open protocol
+ Expand
8

Molecular Mechanisms of EGCG in Endothelial Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
EGCG (≥95% by HPLC) from green tea was purchased from Sigma-Aldrich (St. Louis, MO, USA) and dissolved in water. The antibodies used for Western blotting were as follows: fibronectin antibody was purchased from BD Pharmingen; CD31, VE-cadherin, β-actin, total- and phospho-cofilin, total- and phospho-cell division cycle (CDC) 42, RhoA, and total- and phospho-smad2/3 antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA); total- and phospho-NF-κB p65 and total- and phospho-inhibitor of NF (I)κBα antibodies were purchased from Santa Cruz Biotechnology (Dallas, TX, USA); and α-smooth muscle actin (SMA) antibody was purchased from Abcam (Cambridge, UK).
+ Open protocol
+ Expand
9

Whole-mount Immunostaining Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Whole-mount immunostaining was performed as previously described18 (link), 52 (link). Antibodies used were: VE-cadherin (BD Biosciences, 550548, 1:250), VEGFR2 (R&D Systems, AF644; 1:250), DACH1 (Proteintech, 10914-1-AP, 1:1000), Myosin (Smooth Muscle) Heavy Chain (Alfa Aesar, BT 562, 1:1000), CTNT (DSHB, CT3-3, 1:1000) and NKX2.5 (Santa Cruz, sc-8697, 1:250). Secondary antibodies were Alexa Fluor conjugates (488, 555, 647, Life Technologies; 1:250).
+ Open protocol
+ Expand
10

Retinal Antibody and Isolectin Labeling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antibody and isolectin labeling of retinas was performed as previously described (Stefater et al., 2011 (link)) with the following: Alexa 488-Isolectin IB4 (Life Technologies, I21411; 1:1000), Crim1 (homemade rabbit antiserum), collagen IV (rabbit; Abcam, ab19808; 1:500), BrdU (mouse; Dako, M0744; 1:100), VE-cadherin (rat; BD Biosciences, 555289; 1:100), VE-cadherin (goat; Santa Cruz, sc-6458; 1:200), CD31 (rat; BD Biosciences, 550274; 1:100), active caspase 3 (rabbit; R&D Systems, AF835; 1:100), podocalyxin (goat; R&D Systems, AF1556; 1:200), PDGFRα (goat; R&D Systems, AF1062; 1:100), desmin (rabbit; Abcam, ab15200; 1:500) and smooth muscle actin (mouse; Sigma, C6198; 1:200).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!