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12 protocols using mimics control

1

Regulation of MAP2K1 by miR-34c-5p

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MiR-34c-5p mimic, mimics control, miR-34c-5p inhibitor and inhibitors control were purchased from GenePharma (Shanghai, China). MAP2K1 overexpression plasmid, empty plasmid (Vector), and small interfering RNA (siRNA) targeting MAP2K1, and its negative control were obtained from Sangon Biotech (Shanghai, China). HGC-27 and MKN-28 cells were inoculated into 6-well cell culture plates at a concentration of 2×105 cells per well. When cell growth density reached more than 80% transfection was performed using the Lipofectamine 3000 reagent (Invitrogen, Carlsbad, CA, USA) according to the manufacturer's instructions. After successful transfection verified by RT-qPCR, subsequent experiments were performed.
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2

miR-31-5p Modulation in THP-1 and CAL-1 Cells

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THP-1 and CAL-1 cells were seeded in 24-well plates or 96-well plates at densities of 2.5 × 105 cells or 5 × 104 cells, respectively, and then transfected with negative controls (mimics control, inhibitor control), miR-31-5p mimics or miR-31-5p inhibitor (40µM final concentration, GenePharma, Shanghai, China) by using Lipofectamine 3000 reagent (Invitrogen, CA, USA). The transfected cells were cultured for 24h before analysis and then stimulated with R848 (5µg/mL, Invivogen, France) for 2h, 4h or 24h.
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3

Transfection of BMSCs with RNA Oligoribonucleotides

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The RNA oligoribonucleotides (miR-27a mimics, miR-27a inhibitor, mimics control, inhibitor control, si-PPARγ, and si-GREM1) used in this study were synthesized by Shanghai GenePharma Co., Ltd. (GenePharma Co., Ltd, Shanghai, China). Prior to transfection, BMSCs (2 × 106 cells/mL) that had been isolated and previously cultured were seeded (2 × 106 cells/mL) into 6-well plates and grown until they were 60–80% confluent. The cells were then transfected with the RNA oligoribonucleotides using Lipofectamine™ 2000 (Invitrogen, Carlsbad, CA, USA), according to the manufacturer’s instructions. The cells were then seeded into 6-well plates. The transfection efficiency was assessed by qRT-PCR at 24 h post-transfection.
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4

miR-21a Mimics and Inhibitors Transfection

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The mimics control, miR-21a mimics, inhibitor control, and anti-miR-21a inhibitor were purchased from GenePharma (GenePharma Co., Ltd., Shanghai). Transfection of miRNA mimics/inhibitors was performed using the Lipofectamine 2000 reagent (Invitrogen) according to the manufacturer’s instruction.
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5

MiR-497 Mimics and Inhibitor Transfection

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MiR-497 mimics (5′- CAGCAGCACACUGUGGUUUGU-3′, 5′-AAACCACAGUGUGCUGCUGUU-3′), mimics control (5′-UUCUCCGAACGUGUCACGUTT-3′, 5′-ACGUGACACGUUCGGAGAATT-3′), miR-497 inhibitor (5′-ACAAACCACAGUGUGCUGCUG-3′) and inhibitor control (5′-CAGUACUUUUGUGUAGUACAA-3′) were synthesized by Genepharma (Shanghai, China). MiRNAs at 50–100 nM were transfected using Lipofectamine 2000 transfection reagent (Invitrogen, Carlsbad, CA) according to the manufacturer’s protocol.
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6

Analyzing miRNA Effects on Zebrafish Cell Survival in Cold Stress

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About 3×105 ZF4 cells were seeded into each well of a 6‐well plate. The next day, dre-miR-100-3p mimic (100 pmol), dre-miR-16b mimic (100 pmol), dre-miR-100-3p inhibitor (300 pmol), dre-miR-16b inhibitor (300 pmol), mimics control (100 pmol) or inhibitor control (300 pmol) (GenePharma, China) was introduced into ZF4 cells respectively using Attractene Transfection Reagent (301005, Qiagen) according to the manufacturer’s instructions. The sequences of above mimics and inhibitors are shown in S1 Table. One day later, ZF4 cells were moved into an incubator at 10°C, 5% CO2 for cold treatment. After 36 hours, cells were prepared into a cell suspension and stained with 0.4% Trypan Blue solution (w/v) for 5 min, then counted with a hemocytometer.
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7

Transfection of miRNA mimics/inhibitors

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The mimics control, MiR-138-5p mimics, inhibitor control, and miR-138-5p inhibitor were purchased from GenePharma (GenePharma Co., Ltd., Shanghai). Transfection of miRNA mimics/inhibitors was performed using the Lipofectamine 2000 reagent (Invitrogen) according to the manufacturer’s instruction.
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8

Transfection of miRNA and siRNA

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The mimics control, miR-106b mimics, inhibitor control, anti-miR-106b inhibitor, scrambled siRNA control, Tp53inp1 siRNA, and Cdkn1a siRNA were purchased from GenePharma (GenePharma Co., Ltd., Shanghai). Transfection of miRNA mimics/inhibitor or siRNAs was performed using the Lipofectamine 2000 reagent (Invitrogen) according to the manufacturer’s instruction.
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9

Investigating miR-182-5p and RAB27A in Gastric Cancer

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To investigate the role of miR-182-5p on GC cell activities, HGC-27 cells in the logarithmic growth phase were transfected with 50 nM miR-182-5p mimics or 8 ng mimics control (GenePharma, Shanghai, China) using 1 μl of the Lipofectamine 2000 reagent. The groups were designed as follows: control group, miR-mimics group, anti-miR group, anti-negative control (NC) group, and miR-NC group. To study the role of RAB27A on GC cell activities, HGC-27 cells were transfected with lentiviral vectors recombined with human RAB27A gene sequence (the constructed vector was plenti-GIII-Ubc-RAB27A). These were assigned to the plenty-RAB27A group and cells transfected with the empty vector plasmid were designated as the NC group (named plenti-Null group).
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10

HOTAIRM1 Regulation via siRNA and miRNA

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PcDNA3.1‐HOTAIRM1, pcDNA3.1‐DLGAP1, pcDNA3.1 plasmid vectors, siRNA1‐HOTAIRM1, siRNA2‐HOTAIRM1, miR‐148a mimics, mimics control, miR‐148a inhibitor, and inhibitor control were commercially obtained from GenePharma (Shanghai, China). The sequence of HOTAIRM1 siRNA listed in Table 1. The Fadu cells were plated in 6‐well plates at a density of 1 × 106 per well and cultured in incubator for 24 h at 37°C in 5% CO2 until the cell confluence arrived 80–90%. Transfections were executed by Lipofectamine 2000 (Invitrogen, Carlsbad, CA) following the instructions of manufacturer. The medium was replaced with complete medium after 6‐hour transfection.
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