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8 protocols using collagen 1a1

1

Immunohistochemical and Fluorescent Staining Procedures

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Methods for immunohistochemical staining are described elsewhere 26 (link). Antibodies used for IHC were fibronectin (Abcam), collagen1A1 (Santa Cruz), TGF-β (Abcam), and IL-1β (Santa Cruz). Primary antibody labeling detection was performed after incubation with the appropriate DAB incubated secondary antibody. For fluorescent labeling of Nrf2 nucleus translocation, frozen sections were fixed with 4% PFA for 10 min and permeabilized with 0.1% Triton X-100 for 20 min. After blocking with 5% BSA for 1h, sections were stained with Nrf2 antibody (Abcam), and then stained with secondary antibody, Texas Red (Invitrogen). Nuclei were counterstained with hematoxylin in IHC experiments and with DAPI in SlowFade® Gold Anti-fade Mountant in IF experiments.
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2

Protein Expression Analysis in Heart Tissue

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Tissue lysates were prepared according to standard protocols with slight modifications15 (link). In brief, 1 mL of RIPA buffer containing 0.1% sodiumdodecylsuphate (SDS) with phosphatase and protease inhibitors (Roche Diagnostics) was added to approximately 50 mg of heart tissue. The tissue was further homogenized and protein concentration was determined using DC assay (Bio-Rad). Tissue lysates containing 30 μg protein/well were further subjected to SDS-PAGE separation and proteins were transferred to PVDF membranes. Next, membranes were blocked with 5% skimmed milk. Further, membranes were cut at 55 kDa and primary antibodies was applied separately on each section of the membrane (upper part: Collagen 1a1, Santa Cruz, sc-293182, dilution 1:500; lower part: β-actin, Thermo Fischer Scientific, PA1-183, dilution 1:10 000), and incubated at 4 °C for 16 h. After a series of washes in TBS-T, a corresponding HRP-labeled secondary antibody (Dianova, dilution 1:10 000) was next incubated for 1 h at room temperature. Chemoluminescence was detected by Pierce ECL Substrate and using a ChemiDoc Imaging system (BioRad). Ponceau staining (BioRad) was used to visualize protein transfer. Relative protein levels were determined by ImageJ (NIH, version 1.8.0_66).
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Profiling Fibroblast Secretome by Western Blot

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Western blot analysis of fibroblast lysates and supernatants was done as previously described [11 (link)]. The following antibodies were used: Anti-COL22A1 (Novus, Littleton, CO, USA), fibronectin, collagen 1A1, CTGF, GAPDH (Santa Cruz, Dallas, TX, USA), ACTA2 (Sigma-Aldrich), and horseradish peroxidase-labeled secondary antibody (Santa Cruz). Signals were detected by chemiluminescence (ProteinSimple, San Jose, CA, USA).
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Cardiac Tissue Analysis via Western Blotting

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Cardiac tissues were homogenized with RIPA lysis buffer to prepare lysates. Protein samples were subjected to SDS-PAGE, and transferred onto a PVDF membrane (Bio-Rad, Hercules, CA). After blockade with 5% skimmed milk, membranes were incubated with antibodies. Primary antibodies to fibronectin, CTGF, TNF-α, 3-NT, 4-HNE, Nrf2, and HO-1 were obtained from Abcam (Cambridge, MA); collagen1A1, ANP, IL-1β, NQO1, CAT, SOD2, and β-actin were obtained from Santa Cruz Biotechnology (Santa, CA); PAI-1 was obtained from BD Biosciences (Franklin Lakes, NJ); phosphorylated NF-κB and total NF-κB, as well as horseradish peroxidase (HRP)-conjugated anti-mouse and anti-rabbit secondary antibodies were obtained from Cell Signaling Technology (Danvers, MA). Western blot images were acquired using ChemiDoc Touch Imaging System (Bio-Rad). Grayscale values of bands were analyzed using the Image Lab software (Bio-Rad); protein expressions were normalized relative to those of β-actin.
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5

Immunoblotting Analysis of Cellular Proteins

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For immunoblotting (IB), whole cell lysates were prepared by scraping cells directly in 2x SDS sample buffer. Extracellular matrix was prepared as we previously described [2 (link)]. Proteins were separated by SDS-PAGE and transferred to membranes. Membranes were blocked with 5% non-fat dry milk in TBST buffer then incubated with antibodies against IGFBP-5 (Gropep, Thebarton, SA, Australia), fibronectin, collagen 1A1, GAPDH, tenascin-C, nucleolin (Santa Cruz, Dallas, TX), Histone H3 (Sigma, St. Louis, MO) or tubulin (Epitomics Inc, Burlingame, CA), washed with TBS three times, then incubated with horseradish peroxidase-labeled secondary antibody (Santa Cruz, Dallas, TX). Signals were detected by chemiluminescence (Perkin Elmer, Waltham, MA). Images were analyzed using Image J.
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6

Osteoblast Differentiation on Titanium Implants

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Osteoblasts cultivated on titanium implants for 3, 14, 21 and 28 days in complete medium with FCS, were fixed with 4% paraformaldehyde solution and permeabilized with 0.1% Triton X-100 for 20 min at room temperature. The samples were kept for 20 minutes at room temperature with 10% BSA to avoid non-specific antibody binding. Osteopontin, osteocalcine, and collagen 1A1 (all mouse anti-human primary antibodies from Santa Cruz Biotechnologies) were diluted at a ratio of 1:50 in 1% BSA and incubated overnight at 4°C with the samples. Secondary goat anti-mouse antibodies IgG1 marked with FITC (fluorescein isothiocyanate) and Texas Red (Santa Cruz Biotechnologies) were added and incubated for 45–60 minutes at 37°C. Samples were counterstained with an antifade medium containing DAPI in order to highlight the nuclei and were subsequently examined with a reversed phase epifluorescence Zeiss Axiovert D1 microscope at 488 nm for FITC, 546 nm for Texas Red and 340/360 nm for DAPI.
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7

Liver Protein Expression Analysis

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Lysates prepared from frozen liver samples were used for western blot. The level of phospho-NF-κB p65 (Ser536) (Cell Signaling Technology, #3033), NFκB p65 (Cell Signaling Technology, #8214), the stress-activated protein kinase/Jun-amino-terminal kinase (SAPK/JNK) (Cell Signaling Technology, #9252), phospho-SAPK/JNK(Thr183/Thr185) (Cell Signaling Technology, #9251), IL-1β (Cell Signaling Technology, #12242), Phospho-p38 MAPK (Thr180/Tyr182) (Cell Signaling Technology, #4511), p38 MAPK (Cell Signaling Technology, #8690), FGF21 (Affinity Biosciences, #DF8947), Collagen 1 a 1 (Santa Cruz Biotechnology, # sc-293182),Collagen 3 a 1 (Santa Cruz Biotechnology, #sc-271249), Smooth muscle ac-tin (Santa Cruz Biotechnology, #sc-53142) and Tubulin (Cell Signaling Technology, #2125) were analyzed as described (25 (link), 26 (link)).
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8

Western Blot Analysis of TGF-β Signaling

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Cell lysates were analysed by standard Western blot methods. Briefly, proteins were separated by SDS/PAGE and transferred on to membranes, which were blocked in 5% milk in TBS + 0.1% Tween 20 (TBST) for 1 h at 25°C. Primary antibodies were incubated overnight at 4°C either in 1% non-fat dried skimmed milk powder in TBST or 5% BSA in TBST. Secondary antibodies were incubated for 1 h at 25°C either in 1% or 5% non-fat dried skimmed milk powder in TBST. Antibodies were against TGFBR1 (TGF-β receptor 1; 1:500 dilution), pSMAD2/3 (phosphorylated SMAD2/3; 1:1000 dilution), pSMAD3 (1:500 dilution), SMAD2/3 (1:1000 dilution), GAPDH (glyceraldehyde-3-phosphate dehydrogenase; 1:5000 dilution) all from Cell Signaling Technology; TGFBR2 (TGF-β receptor 2; 1:500 dilution), E-cad (epithelial cadherin; 1:500 dilution), collagen 1A1 (1:500 dilution) all from Santa Cruz Biotechnology; ELMO2 (engulfment and cell motility 2; 1:500 dilution; Sigma–Aldrich); and αSMA (1:3000 dilution; Dako). Secondary antibodies were against mouse (P0447), rabbit (P0448) or goat (P0449) (1:5000 dilution;, all from Dako). Western blots were scanned by densitometry and quantified using ImageJ software (NIH).
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