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14 protocols using pgc 1α

1

Streptozotocin-Induced Cardiac Dysfunction Model

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ASIV was purchased from Nanjing Jingzhu Bio-Technology Co., Ltd. Streptozotocin (STZ) and carboxymethyl cellulose sodium (CMC-Na) were purchased from Sigma-Aldrich (Merck KGaA). A TUNEL kit (In Situ Cell Death Detection kit, AP) was purchased from Roche Molecular Diagnostics. ATP (kt39623), ADP (kt210319) and AMP (kt28319) ELISA kits were purchased from MSKBIO Co. Ltd. A BCA Protein Assay kit was purchased from Beyotime Institute of Biotechnology. TRIzol reagent and a reverse transcription-PCR (RT-PCR) kit were purchased from Dingguo Biological Co. Ltd. PGC-1α, NRF1, atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) were purchased from ABclonal. Cleaved caspase-3, caspase-3 and cytochrome c (Cyt C) were purchased from Biological Technology Co. Ltd.
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2

Immunohistochemical Analysis of Mitochondrial Dynamics

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Immunohistochemistry was conducted on 4 μm paraffin-embedded renal tissues. Antigens were extracted by boiling in citrate buffer after deparaffinization and rehydration. Sections were blocked for 15 min with 0.3% H2O2 and 1 h with 5% BSA. Primary antibodies of Drp1 (1:200, Abcam, United States), Mfn2 (1:250, CST, USA), Fis1 (1:200, Abcam, United States), Sirt1 (1: 200, Abcam, USA), PGC-1α (1:200, ABclonal, China) were incubated overnight at 4°C. Then the sections were incubated with the secondary antibodies (Dako, United States) for 1 h at 37°C. Finally, the sections were counterstained with diaminobenzidine and hematoxylin. A light microscope (Leica, Germany) was then used to collect photomicrographs. And all photomicrographs were analyzed by ImageJ software.
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3

Protein Expression Analysis in Kidney Tissues

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RIPA lysis buffer (Beyotime Tech, China) containing phosphatase and protease inhibitors was used to extract proteins from kidney tissues and cells. The tissue lysates were mixed with 5 × SDS buffer and denatured at 100 °C for 10 min. The samples were separated by SDS-polyacrylamide gel electrophoresis (SDS-page) and transferred to polyvinylidene fluoride (PVDF) membranes. The membranes were then blocked with 5% nonfat milk in TBST for 1 h at room temperature. Primary antibodies of Bcl-2 (1:1,000, Abcam, United States), Bax (1:1,000, CST, United States), cleaved-caspase-3 (1:500, CST, United States), Drp1 (1:1,000, Abcam, United States), Mfn2 (1:1,000, CST, United States), Fis1 (1:500, Abcam, United States), Sirt1 (1:1,000, Abcam, United States), PGC-1α (1:1,000, ABclonal, China), β-actin (1:5,000, Abcam, United States) were incubated with membranes overnight at 4°C. After washing with TBST for 5–10 min, the membranes were incubated at room temperature for 1 h with HRP combined secondary antibody (Abcam, United States) and then washed with TBST for 10 min for 3 times. Finally, the proteins bands were visualized with ECL and the band intensity was measured with ImageJ software.
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4

Protein Expression Analysis in Mouse Liver

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Mouse livers (20 mg) were lysed using RIPA lysis buffer (Beyotime, China) containing 1% cock-tail (Sigma-Aldrich, St Louis, MO, United States). Total protein lysates were separated on 10% SDS-PAGE gels and then transferred to PVDF membranes (Millipore, United States), and then were incubated overnight at 4°C with antibodies against sirtuin 1 (Sirt1), histone 3, phospho-AMPKα (Thr172), and AMPKα (Cell Signaling Technology, United States), PGC-1α, phospho-ACC1-S79, ACC, phospho-mTOR-S2448, SREBP-1c, PPARα (ABclonal Technology Co., Ltd., Wuhan, China), β-actin, and β-tubulin (Abcam, MA, United States). The membranes were washed and incubated with HRP-conjugated secondary antibodies (Jackson ImmunoResearch Laboratories, Inc., United States) and then detected using an ECL Plus immunoblot detection system (Clinx, Shanghai, China).
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5

Immunohistochemical Analysis of Brain Tissue

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Paraffin embedded brain tissues (n = 6) was cut into sections of ~5 μm thickness using a pathology microtome (Shanghai Leica Instruments Co., Ltd.). They were deparaffinized, rinsed in distilled water, antigen retrieval, rinsed three times in PBS and incubated in blocking solution 5% BSA for 20 min, sections were incubated with AMPK β 1 (Abclonal, A12491, 1:100), P-AMPK β 1 (Abclonal, AP1195, 1:100), TFAM (Abclonal, A13552, 1:1 00), PGC1 α (Abclonal, A12348, 1:100), NRF2 (Abclonal, A0674, 1:100), UCP2 (Servicebio, GB11377, 1:100) in a wet box at 4°C overnight. Next, it was rewarmed for 30 min, rinsed three times in PBS, secondary antibodies were added dropwise and incubated for 1 h at room temperature. Then rinsed three times in PBS, developed with freshly configured DAB, counter-stained with hematoxylin, and mounted with dehydrated, transparent, and neutral gum. Finally, five fields of positive expression were randomly taken from each section at 400 × magnification, and the software Image J (National Institutes of health, USA) was used to measure and calculate the average absorbance value.
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6

Protein Expression Analysis in Tumor Tissue

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RIPA buffer (Beyotime Biotechnology, China) was used to extract total protein from the tumor tissue, and the BCA method was used for quantitative detection of protein. The proteins were isolated in 12% sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto a polyvinylidene fluoride (PVDF) membrane. After blocking with 5% skim milk at room temperature, the PVDF membrane was incubated with the specific primary antibodies against PGC-1α, PINK1, Parkin (ABclonal Technology, China; rabbit polyclonal antibody, 1:1000), Bax, Bcl-2, caspase-9, caspase-3, and cleaved caspase-3 (Cell Signaling Technology, USA; rabbit anti-mouse monoclonal antibody, 1:1000), at 4 °C overnight. After incubation with the secondary antibody (Cell Signaling Technology, USA; horseradish peroxidase [HRP]-conjugated goat anti-rabbit immunoglobulin G [IgG], 1:2000), the protein bands were visualized by enhanced chemiluminescence reagent (Merck Millipore, USA) and detected using a bioimaging system (Bio-Rad ChemiDoc™ XRS+ Imaging System, USA). The results were quantified by ImageJ software. The relative protein expression was obtained by the gray value of target protein/GAPDH.
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7

Murine Ovarian Tissue and KGN Cell Protein Analysis

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Murine ovarian tissue and drug-treated KGN cells were subjected to protein extraction in RIPA lysis and extraction buffer (Thermo, USA). Protein concentrations were quantified using the BCA protein assay kit (Thermo, USA). The protein samples were fractionated by SDS‒PAGE and then transferred to PVDF membranes (Millipore, USA). Subsequently, the membrane was blocked using 5% skim milk for 1 h. Then, the sections were incubated overnight at 4 °C with the corresponding primary antibodies, including pATM, PGC-1α, TERF2 (ABclonal, China), SIRT1, p53 (Proteintech Group, China), Bax, Bcl-2, and β-actin (HuaBio, China), and then probed with secondary antibodies. Protein chemiluminescence was detected using the ECL chemiluminescence reagent (Thermo, USA). Finally, exposure was performed using an exposure device.
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8

Western Blot Analysis of Insulin Signaling

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The tissues were isolated from mice in the fed condition and then immediately frozen in liquid nitrogen. Tissue homogenates were prepared, and 30–50 μg of protein was resolved on 4%–12% SDS-PAGE gels and subjected to Western blotting (12 (link)). Immunoblots were performed using antibodies against the following proteins: AKT (catalog 4685), P-AKTThr308 (catalog 13038), P-AKTSer473 (catalog 4060), FoxO1 (catalog 2880), FoxO3a (catalog D19A7), P-FoxO1Ser256 (catalog 9461), P-FoxO1Thr24/FoxO3aThr32/FoxO4Thr28 (catalog 2599), FoxO1 (catalog 2880), GSK3α/β (catalog 5676), P-GSK3βSer9 (catalog 5558), GS (catalog 3893), P-GSSer641 (catalog 94905), P-IRS-1Ser307 (catalog 2381), P-IRS-1Ser612 (catalog 3203), P-TSC2Ser939 (catalog 3615), TSC2 (catalog 3612), p-mTORSer2449 (catalog 5536), mTOR (catalog 2983), and P-ERKThr202/Tyr204 (catalog 9101) were purchased from Cell Signaling Technology. Antibodies against HNF-4α (catalog A2085), PGC-1α (catalog A11971), GK (catalog Ab293), G6Pase (catalog A16234), GKCR (catalog A5678), and β-actin (catalog AC026) were purchased from ABclonal, and ERK (catalog 514302) was purchased from Santa Cruz Biotechnology. Goat anti-mouse and goat anti–rabbit HRP–conjugated secondary antibodies (1:3000; Bio-Rad, 1662408EDU) were used for described experiments.
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9

Molecular Mechanisms of Cisplatin-Induced Apoptosis

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Cisplatin (#T1564) is from Topsicence (United States); FPS-ZM1 (#HY-19370) is from MedChemExpress (United States); rabbit anti-RAGE (#ab3611) is from Abcam (United Kingdom); rabbit anti-Bax (#CPA1092), and Bcl-2 (#CPA1095) antibodies are from Cohesion Bioscience (United Kingdom); rabbit anti-Phospho-NF-κB p65 (Ser536) (#3033) and NF-κB p65 (#3034) antibodies are from Cell Signaling Technology (United States); rat anti-F4/80 antibody (#14-4801-82) is from Invitrogen United States; mouse anti-GAPDH (#AC033), rabbit anti-β-actin (#AC026), Cpt1a (#A5307) and PGC-1α (#A12348) and horseradish peroxidase (HRP)-conjugated goat anti-rabbit IgG (#AS014) antibodies are from ABclonal (China). One Step Terminal transferase dUTP nick-end labelling (TUNEL) Apoptosis Assay Kit (#C1090) is from Beyotime (China). SuperKine™ West Femto Maximum Sensitivity Substrate (#BMU102-CN) is from Abbkine (China).
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10

Mitochondrial Dynamics and Autophagy Regulation

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Following monoclonal antibodies were purchased from CST: Mfn1 (#14739), Mfn2 (#9482), OPA1 (#67589), Drp1 (#8570), p-Drp1 Ser 616 (#4494), MFF (#84580), Beclin1 (#3495), Atg5 (#12994), p62 (#23214), LC3A/B (#12741), mTOR (#2983), Parkin (#4211), AMPKα (#5831), and p-AMPK Thr172α (#2535). Following monoclonal antibodies were purchased from Abcam: β-actin (ab8826), PINK1 (ab75487), and p-mTOR Ser 2481 (ab137133). Following polyclonal antibodies were purchased from ABclonal: VDAC (A15735) and PGC1α (A12348). All of these above antibodies were used at 1:1000 dilution, besides β-actin (ab8826) at 1:5000 and PINK1 (ab75487) at 1:200. PVDF membrane was purchased from GE Health (10600023). D-Glucose (G7528) and berberine (PHR1502) were purchased from Sigma, Mdivi-1(ab144589) and compound C (ab120843) were purchased from Abcam.
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