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Nanowizard 3 bioscience afm

Manufactured by Bruker
Sourced in Germany

The NanoWizard 3 BioScience AFM is an atomic force microscope designed for high-resolution imaging and analysis of biological samples. It provides precise nanoscale topographical and mechanical property measurements in liquid and air environments.

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8 protocols using nanowizard 3 bioscience afm

1

Membrane Topography Analysis of Living MEFs

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We employed an atomic force microscope (NanoWizard® 3 BioScience AFM, JPK Instruments AG, Germany) to observe the membrane topography on living MEFs. We used an AFM probe with a 125-μm long cantilever made of a quartz-like material (qp-SCONT, NANOSENSORS, NanoWorld AG, Switzerland). The spring constant of the cantilever was 0.01 N/m.
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2

AFM Measurements of Force-Separation Curves

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Force-separation curves were measured with either an MFP3D AFM (Asylum Research, Oxford Instruments) or a NanoWizard 3 BioScience AFM (JPK Instruments, Bruker Nano GmbH) at room temperature and under liquid environment (sodium phosphate buffer 50 mM, pH 6.5). After having measured the sensitivity (V·m−1), the cantilever spring constants were individually calibrated by using the equipartition theorem (thermal noise routine)69 (link). Force-separation curves were recorded by approaching and retracting the AFM tip at constant velocity (0.5 to 4 μm·s−1) and in the force map mode over an area of 3 × 3 μm2. The maximum applied (contact) force in each cycle was set to 300 pN. At least two independent experiments were conducted in each case. AFM data were acquired and treated using the AFM software and analyzed with OriginPro 8.5.0 SR1 (OriginLab Corp.). Errors are indicated as the standard deviation of the mean.
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3

Tapping Mode AFM Imaging of Samples

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4 μL of sample solution was dropped onto a freshly cleaved mica surface and was allowed to air dry. The mica was then rinsed with water and gently purge dried with nitrogen. A topographic image was recorded under a NanoWizard 3 BioScience AFM (JPK, Berlin, Germany) in the tapping mode at ambient temperature, with a 512 × 512 pixel resolution and a scanning speed of 1.0 Hz.
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4

Biomechanical Profiling of HEK Cells

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HEK were cultured on TCP (Greiner BioOne, Stonehouse, UK) or 4 kPa Petrisoft® biomimetic 10 cm dishes for 4 days following the standard protocol previously described. Cells were then trypsinised and transferred to the lids of TCP 6 cm dishes (Greiner BioOne) and allowed to adhere overnight. Dish lids were used at this stage due to their lower sides, which were required to ensure samples fitted into the AFM. The ability of cells to adhere to dish lids was tested prior to running the experiments. In order to ensure adequate provision of medium, the lids were placed within a standard 10 cm dish overnight before being removed in order to conduct the experiment. Cells were analysed using a NanoWizard® 3 Bioscience AFM (JPK) using a Silicon Nitride pyramidal probe cantilever with a spring constant of 0.005–0.022 Nm−1 (AppNano, Mountain View, CA, USA). Young’s modulus values were assessed across 10 different cytoplasmic and nuclear regions per cell using JPKSPM Data Analysis software and the supplied Hertz-Fit Application Note for biological samples. In total 6 random cells for each condition (i.e., TCP and 4 kPa) were analysed.
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5

Atomic Force Microscopy of Samples

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Atomic force microscopy (AFM) was performed on a JPK Nanowizard 3 BioScience AFM (JPK, Germany). Images were taken operating in the AC mode and analysed by the SPM and DP 4.2 software version. Si-cantilevers with a force constant of 2.8 N/m and a resonance frequency of 75 kHz (Nanoworld AG, Switzerland) were used. The phase signal was set to zero at a frequency 5-10% lower than the resonance one. Drive amplitude was 700 mV and the amplitude set point was 700 mV.
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6

Morphology and Coverages Analyzed by SEM and AFM

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Coverages and morphology were measured by scanning electron microscopy (SEM). All SEM images are taken at 3000x magnification and 25 kV beam energy (LEO VP1400 operated in high vacuum). Atomic Force Microscopy (AFM) is operated in tapping mode, both in air and liquid conditions using a NanoWizard 3 BioScience AFM (JPK Instruments). The resonance frequency of the AFM cantilevers (Nano and More, USA) was 300 kHz with a constant force of 50 N/m.
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7

Quantitative Nanomechanical Characterization of Samples

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AFM measurements were carried out using a JPK Nanowizard ® 3 Bioscience AFM equipped with JPK Vortis SPM Control controller with XYZ closed-loop feedback (JPK instrument, Berlin) on an inverted microscope. Silicon cantilevers from Budget sensor (model: Multi-75-Al-G with 30 nm Aluminium reflected coating) were used for the quantitative imaging (QI) mode and force spectroscopy. The samples were first incubated in the pH 5 aqueous solution, where AFM tip was approached to the sample and QI measurement was used to measure the morphology of the samples. Force spectroscopy was carried out later on the sample on various location and the fore spectra were collected. The force spectra are averaged from the multiple force curves. The spring constants of the cantilevers were calibrated according to thermal noise method, which were found to be in the range of 4 -6 N/m. The sensitivity of the probe was subsequently measured on a silicon wafer. All data conversions were done on the JPK Data Processing software. The modulus was obtained by fitting the extended part of the force-penetration curves with simple Hertz model (JPK data analysis software). Individual force curve was fitted and tabulated into the graph.
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8

Morphological Characterization of CNS Nanoparticles

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Samples were prepared by putting a droplet of CNS suspension (0.1 wt%) onto a 1 × 1 cm 2 of a freshly cleaved mica. All samples were left 2 min in an atmospheric condition, rinsed with distilled water and blow-dried with N2 gas. Unattached particles were finally removed from the substrate using distilled water.
Dynamic-mode AFM was used to determine the morphology of the particles using a JPK NanoWizard 3 BioScience AFM. Each measurement was carried out in the air with commercial Bruker nanoprobes. Tips with a spring constant of 40 N/m and an amplitude point of 80% of the fundamental resonance peak, in the attractive regime, were chosen.
The Quantitive Imaging (QI) mode proposed by JPK was used to determine the force/distance curve for each pixel (256 × 256) and tip with a spring constant of 3 N/m (i.e. 2.96 N/m measured) was selected. Sensitivity calibration was derived by measuring thermal noise (30.91 nm/V measured). Optimal resolution was obtained using a 3.0 V free oscillating amplitude and 10-20 ms/pixel scanning speed. Additional information about the Quantitative Imaging is found in A2 section.
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