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8 protocols using tofacitinib

1

In Vitro Characterization of Baricitinib and Tofacitinib

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Baricitinib (99.97% purity) and tofacitinib (99.96% purity) compounds were purchased from MedChemExpress LLC (New Jersey, www.medchemexpress.com). In vitro characterization was performed on a fee-for-service basis at Eurofins (www.eurofins.com) if the assay was commercially available.
For the biochemical assays, compound targets showing an experimental readout greater than 25% (inhibition or stimulation) at 30 µM were selected for follow-up, and dose–response curve characterization and determination IC50/EC50 (two or three replicates, multiple concentrations, maximum 100 µM concentration). Additional details on the conduct of in vitro assays are included in Supplementary Information S1.
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2

Inhibition of IFN-γ production by NK-92 cells

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Human NK-92 cells were analyzed for their ability to produce IFN-γ upon incubation with different small-molecule inhibitors. Baricitinib (HY-15315), Tofacitinib (HY-40354), Upadacitinib (HY-19569), and Ritlecitinib (HY-100754) were purchased from MedChemExpress LLC. Ruxolitinib (S1378) and Dexamethasone (S1322) were purchased from Selleckchem. NK-92 cells were initially starved for 4 h in plain RPMI medium. Cells were then resuspended at a density of 1 × 106 cells/mL in complete RPMI, and 100 μL of the cell suspension was incubated with increasing concentrations of the inhibitors (up to 3 µM) in the presence of L19-IL12 (10 ng/mL). After 24 h, cell-free supernatants were collected, and the concentration of IFN-γ was measured using the ELISA MAXTM Set Human IFN-γ kit (BioLegend).
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3

Biochemical and Crystallographic Experiments

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Reagents for biochemical and crystallographic experiments were purchased from Fisher Scientific and Hampton Research unless otherwise indicated. Ruxolitinib (phosphate) was from LC Laboratories (R-6688, >99%), Tofacitinib (citrate) from MedChemExpress (HY-40354A, 99.1%), Baricitinib (free base) from Combi-blocks (QJ-1094, 98%), Fedratinib from MedChemExpress (HY-10409, 99.9%). The following antibodies were used for immunoblotting: His-HRP (ProteinTech, HRP-66005, 1:5,000), pJAK2 (Y1007/1008) (Cell Signaling, 3771, 1:1,000), actin (Sigma, A5441, 1:1,000), GAPDH-HRP (ProteinTech, HRP-60004, 1:10,000), anti-mouse-HRP IgG (Jackson Immuno Research, 115-035-003, 1:2,000).
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4

Silencing PTPN2 and STAT1 in Cell Lines

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HT-29.cl19A were obtained from Kim E. Barrett (University of California, San Diego, California), Caco-2BBe, A549 and THP-1 cells were originally obtained from ATCC and cultured according to the manufacturer’s recommendation in medium with 10% FCS. For PTPN2 knockdown, the cells were infected with lentiviral particles containing non-targeting control shRNA (Ctr) or PTPN2-specfic shRNA as described previously49 and stable clones selected using puromycin. For STAT1 silencing, the cells were transfected with previously validated, STAT1-specific or non-targeting control siRNA constructs (Dharmacon) using DharmaFECT transfectionre agents as described previously50 (link). In experiments with STAT1 siRNA and IFN-γ treatment, the culture medium was replaced with serum-free medium 8 h prior to addition of IFN-γ (1000 IU; Roche). In experiments with tofacitinib, the cells were treated with tofacitinib (50 μM, MedChemExpress, Monmouth Junction, NJ). Control cells were treated with an equal amount of vehicle (dimethyl sulfoxide, DMSO, 0.5%, Sigma-Aldrich).
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5

Oral Gavage Treatment of Mice with Tofacitinib and Idasanutlin

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For the in vivo experiment, mice were treated through oral gavage with tofacitinib (40 mg/kg per day), idasanutlin (30 mg/kg per day) (MedChemExpress, New Jersey, USA), or vehicle (0.2% dimethylsulfoxide [DMSO]). The mice received medication daily until death. For the in vitro experiment, MOLT-4 cells were treated with tofacitinib (2.0 μM), idasanutlin (0.5 μM) or 0.2% DMSO in culture medium for 48 h and then proliferation and apoptosis were examined.
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6

In Vitro Screening of Baricitinib and Tofacitinib for Alzheimer's Disease

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Baricitinib (99.97% purity) and tofacitinib (99.96% purity) were purchased from MedChem Express LLC
22 and Biosynth Carbosynth.
23 Both drugs were tested in vitro on a selection of protein targets associated with AD. The protein targets (Table 1) were chosen using the TIGER target prediction. Glutaminyl cyclase and Ras‐related protein RAB‐7 experiments were conducted by directly visualizing protein inhibition. The concentrations of Baricitinib and tofacitinib were increased incrementally, up to a maximum concentration of 200 μM (see Table S1 in supporting information). Other targets were performed on a fee‐for‐service basis at Eurofins.
24 In these in vitro biochemical assays, if the drug showed inhibition or stimulation exceeding 25% at a concentration of 30 μM in two separate measurements, binding constants (Kd) were determined. Assay details are included in supporting information.
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7

Immunosuppressant Effects on Lung Cell Viability

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6‐mercaptopurine, methotrexate, tofacitinib, budesonide, 5‐aminosalicylic acid (5‐ASA), sulfasalazine, azathioprine and filgotinib were purchased from MedChem Express (USA). Cyclosporin A (CsA) and tacrolimus (FK506) were purchased from Abcam. Everolimus, dexamethasone (Dex), prednisolone (Pred), 6‐TG and MPA were purchased from Sigma. Rapamycin was purchased from Santa Cruz Biotech. All the reagents were dissolved in dimethylsulfoxide (DMSO, Sigma) except MPA, which was dissolved in methanol. The effects of these immunosuppressants on lung cell line viability were determined by MTT assay (Figure S1).
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8

Inhibitory Compound Dilution Protocol

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P6, AG490, peficitinib, tofacitinib, ruxolitinib, FLLL32, IQDMA, baricitinib, and WP1066 were obtained from MedChemExpress (CA, USA; Table 1). All inhibitors were dissolved in an appropriate volume of DMSO to make a 10 mM stock concentration. These stocks were then diluted 1000-fold in complete RPMI 1640 to prepare 10 μM working solutions of each. Those solutions were then diluted threefold serially in RPMI 1640 to prepare 3.3, 1.1, and 0.37 μM working solutions.
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