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1

Immunoblotting analysis of protein expression

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Protein lysates from HEK, lymphoblast and neuronal cultures were extracted in lysis buffer [50 mM Tris (pH 7.5), 150 mM NaCl, 0.1% SDS, 1% Nonidet P40, 0.2 mM phenylmethylsulfonyl fluoride, 2 μg/ml pepstatin, and 1 μg/ml leupeptin] and then separated by SDS-PAGE and assayed by immunoblotting with the following primary antibodies: anti-ATP6V1A (1:1000; #ab137574, Abcam), anti-ATP6V1B2 (1:2000; #ab73404, Abcam), anti-LAMP1 (1:1000; #ab24170, Abcam), anti-EEA1 (1:5000; #610457, BD Bioscience), LC3B (1:1000; #7543, Sigma-Aldrich), p62 (1:1000, #P0067, Sigma-Aldrich), anti-GAPDH (1/1000; #SC-25778, Santa Cruz Biotechnology), anti-VAMP2 (1:1000; #104202; Synaptic Systems); anti-V-GLUT1 (1:1000; #135304, Synaptic Systems) anti-PSD95 (1:1000; #SC-32290, Santa Cruz Biotechnology).
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2

Hippocampal Protein Extraction and Analysis

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Each gram of hippocampi were homogenized with 30 µl cocktail protease inhibitor (Roche Molecular Biochemicals, Germany) and 3 ml RIPA buffer (US Biological, USA). After centrifugation at 12000 rpm (4 •C), the supernatant was collected and stored at -20 •C. BCA assay and spectrophotometry were used to assess the total protein concentration. The supernatant sample (50µg of protein) was separated by 10% SDS-PAGE and transferred to PVDF membrane (Millipore Inc., Darmstadt, Germany). After blocking with 5% skim milk for 2 hours, the membrane was incubated with primary antibody overnight: Rac1 (1:500, sc-514583, Santa Cruz Biotechnology), Tiam1 (1:500, sc-393315, Santa Cruz Biotechnology), α-chimaerin (1:500, sc-365985, Santa Cruz Biotechnology), Bcr (1:500, sc-104, Santa Cruz Biotechnology), GluR-1 (1:500, sc-13152, Santa Cruz Biotechnology), Synapsin 1(1:500, ab254349, Abcam), and PSD-95 (1:500, sc-32290, Santa Cruz Biotechnology). The speci city of these primary antibodies has been veri ed (Mao et Tsai et al. 2012 (link)). The membrane was incubated with a mixture of anti-rabbit IgG (Golden Bridge, Zhongshan, China) and horseradish peroxidase (HRP) for 1 hour at room temperature. Quantity One software (Bio-Rad, USA) was used for quantitative analysis.
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