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8 protocols using anti mlh1 g168 728

1

Antibody Characterization for MLH1 Analysis

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Anti-MLH1 (G168-728) and anti-PMS2 (A16-4) were purchased from Pharmingen (BD Biosciences, Heidelberg, Germany), anti-beta Actin (Clone AC-15) was from Sigma-Aldrich (Munich, Germany). Anti-phospho-AKT-substrate (23C8D2), used for the detection of phosphorylation of MLH1 at amino acid position serine 477 and hereinafter referred to as anti-p-MLH1, was obtained from Cell Signaling (New England Biolabs GmbH, Frankfurt, Germany). Anti-MLH1 (N-20), anti-CK2α (D-10), and anti-Lamin β (C-20) were from Santa Cruz (Santa Cruz Biotechnology, Heidelberg, Germany). Anti-MLH1 (ab74541) (Abcam, Cambridge UK) and anti-Adaptin γ (clone 88/Adaptin γ (RUO)) were from BD Biosciences (BD Biosciences, Heidelberg, Germany).
Anti-fluorescence-labeled anti-rabbit IRDye800CW and anti-fluorescence-labeled anti-mouse IRDye680LT were from LI-COR (LI-COR Biosciences GmbH, Bad Homburg, Germany).
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2

Quantifying MLH1 Protein Levels

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MLH1-deficient HEK293T cells (78 (link)) were transiently transfected with 5 mg of vector DNA and 20 mL of polyethyleneimine (1 mg/ml, ‘Max’ linear, 40 kDa, Polysciences,Warrington, PA) and extracted as described previously (79 (link)). The extracts were analyzed by SDS-PAGE and immunoblotting (using anti-MLH1, G168–728, BD Biosciences, and anti-PMS2, E-19, and anti-beta-Actin, C2, from Santa Cruz Biotechnologies). Chemiluminescence signals (Immobilon, Millipore) were detected in an LAS-4000 mini camera (Fuji) and quantified using Multi Gauge v3.2.
For determining MLH1 concentration, pure MutLα (MLH1-PMS2) was used, which was a kind gift of Josef Jiricny, Zürich, Switzerland (80 (link)).
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3

Antibody Immunoblotting Protocols

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Anti-SPTAN1 (C-11), anti-Lamin B (C-20) and anti-MSH2 (H-300) were obtained from Santa Cruz Biotechnology (Santa Cruz, CA), anti-MLH1 (G168-728) as well as anti-gamma Adaptin (88) were from Pharmingen (BD Biosciences, United States), anti-beta Actin (Clone AC-15) was purchased from Sigma (Sigma-Aldrich, USA) and anti-SPTAN1 (MAB1622) was from Millipore (Millipore, USA).
The pcDNA3.1+/MLH1, pcDNA3.1+/PMS2 and pcDNA3.1+/MSH2 expression plasmids were described previously [27 (link)]. Full length SPTAN1 cDNA was generated from total RNA of human lymphocytes and subcloned into the eukaryotic expression vector pcDNA3.1- via the KpnI/XhoI restriction sites.
All plasmids were confirmed by sequencing and reading frames were corrected using site-directed mutagenesis, if necessary. All oligonucleotides were purchased from Sigma-Aldrich (Munich, Germany).
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4

Immunoblotting for Phospho-MLH1 Detection

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Anti-MLH1 (G168-728) and anti-PMS2 (A16-4) were purchased from Pharmingen (BD Biosciences, Heidelberg, Germany). Anti-beta Actin (Clone AC-15) was from Sigma-Aldrich (Munich, Germany). Anti-phospho-AKT-substrate (23C8D2), used for the detection of phosphorylation of MLH1 at amino acid position serine 477 and hereinafter referred to as anti-p-MLH1, was obtained from Cell Signaling (New England Biolabs GmbH, Frankfurt, Germany).
Anti-fluorescence-labeled anti-mouse IRDye680LT and anti-fluorescence-labeled anti-rabbit IRDye800CW were from LI-COR (LI-COR Biosciences GmbH, Bad Homburg, Germany).
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5

Immunohistochemical Staining for MMR Proteins

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The protocol for IHC has been reported previously.6 Briefly, deparaffinized 4‐mm‐thick sections from each paraffin block were exposed to 0.3% hydrogen peroxide for 15 min to block endogenous peroxidase activity. Antigen retrieval was performed by autoclaving in a 10‐mM citrate buffer (pH 6.0) for 10 min. Anti‐MLH1 (G168–728; 1:200 dilution; BD Biosciences, Franklin Lakes, NJ, USA), anti‐MSH2 (FE11; 1:100 dilution; Biocare Medical, Concord, CA, USA), anti‐PMS2 (A16‐4; 1:200 dilution; BD Biosciences) and anti‐MSH6 antibodies (SP93;1:200 dilution; Spring Bioscience, Pleasanton, CA, USA) were used as the primary antibodies. We used an automated stainer (Dako, Tokyo, Japan) according to the vendor's protocol for staining. ChemMate EnVision (Dako, Tokyo, Japan) methods were used for detection. The IHC results were evaluated by two pathologists independently and the results coincided completely.
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6

Generating Missense Variants in MLH1 and PMS2

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The HEK293T cell line, pcDNA3-MLH1, and pSG5-PMS2 have previously been described [26] . The Q5 Site directed mutagenesis system (New England Biolabs, Frankfurt, Germany) was used to generate missense variants with appropriate primes according to the manufacturer's protocols. Direct sequencing was used to confirm all of the plasmids that were created [14].
HEK293T cells were transfected as previously described [28] . In brief, at 50-70% confluence, HEK293T cells were transiently transfected in 10 cm round dishes with expression plasmids (1 g/ml, respectively) using 10 l/l of the cationic polymer polyethylenimine (Polysciences, Warrington, PA; stock solution 1 mg/ml). Cells were prepared for confocal laser scanning microscopy or protein extraction after 48 hours [25, 27, 28] .
The extracts were examined using SDS-PAGE and immunoblotting with anti-MLH1, G168-728 from BD Biosciences, as well as anti-PMS2, E-19, and anti-beta-Actin, C2 from Santa Cruz Biotechnologies. A Fuji LAS-4000 mini camera and Multi Gauge v3.2 were used to detect and quantify chemiluminescence signals (Immobilon, Millipore) [14] .
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7

Characterization of MLH1 and PMS2 Variants

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The HEK293T cell line, pcDNA3-MLH1, and pSG5-PMS2 have been previously described [39 (link)]. Site-directed mutagenesis was used to generate missense variants using the Q5 Site directed mutagenesis system (New England Biolabs, Frankfurt, Germany) with appropriate primes according to the manufacturers’ protocols. All resulting plasmids were then confirmed by direct sequencing.
HEK293T cells in 10 cm round dishes were transiently transfected with 5 μg of vector DNA and 20 μL of polyethyleneimine (1 mg/mL, "Max" linear, 40 kDa, Polysciences, Warrington, PA) and extracted as previously described [40 (link)].
SDS-PAGE and immunoblotting were performed to examine the extracts using anti-MLH1, G168–728, BD Biosciences, and anti-PMS2, E-19, and anti-beta-Actin, C2 from Santa Cruz Biotechnologies. Chemiluminescence signals (Immobilon, Millipore) were detected and quantified using a Fuji LAS-4000 mini camera and Multi Gauge v3.2.
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8

Characterization of MMR Protein Variants

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Anti-MLH1 (G168-728) and anti-PMS2 (A16-4) were purchased from Pharmingen (BD Biosciences, Heidelberg, Germany), anti-beta Actin (Clone AC-15) was from Sigma-Aldrich (Munich, Germany). Anti-phospho-AKT-substrate (23C8D2), hereinafter The pcDNA3.1+/MLH1 and pcDNA3.1+/PMS2 expression plasmids were described previously [12] . In addition, the MLH1-variants MLH1 S477A , MLH1 D478A and MLH1 E480A were generated by site-directed mutagenesis (for detailed primer information see supplementary table 1) and overexpressed in HEK293T cells.
All plasmids were confirmed by sequencing. All oligonucleotides were purchased from Sigma-Aldrich (Munich, Germany). pEGFP_C1 plasmid (negative control plasmid for the MMR assay) was purchased from Clontech Laboratories.
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