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3 protocols using fluorchem m system

1

Western Blot Analysis of Focal Adhesion Signaling

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SCs were washed twice with cold PBS and incubated in a lysis buffer (RIPA, BioTeke, Beijing, China) containing 1 mmol/L protease inhibitor PMSF (Sigma, St. Louis, MO, USA) and phosphatase inhibitors (Invitrogen, Carlsbad, CA, USA) on ice, followed by centrifugation at 12,000 g and 4°C for 15 min. Protein concentration was determined using a Micro BCA Protein Assay Kit (Thermo Fisher Scientific, Rockford, USA). Protein samples (15 μg) were loaded onto a 10% polyacrylamide gel and transferred onto PVDF membranes using semidry methodology, as previously described [36 (link)]. Membranes were probed using specific antibodies: anti-FAK (#3285), anti-phospho-FAK (Tyr397; #8556), anti-paxillin (#3283), anti-phospho-paxillin (Tyr118; #2541), anti-Akt (#9272) or anti-phospho-Akt (Ser473; #9271), which were purchased from Cell Signaling Technology (Beverly, MA, USA). Anti-β-actin (AP0060), anti-rabbit IgG (BS13278) and anti-mouse IgG (BS30503) were obtained from Bioworld Technology (Louis Park, MN, USA). The proteins were visualized with the ECL-Plus Western blotting reagent in a FluorChem M system (Cell BioSciences, San Leandro, CA, USA). Band density was analyzed by Image J (http://rsb.info.nih.gov/ij/).
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2

Western Blot Analysis of Protein Samples

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Cell lysates were subjected to 12% SDS-PAGE and bound to Hybond-C Extra nitrocellulose membranes (Amersham Biosciences, Piscataway, NJ) using a semi-dry blotting system (Amersham Biosciences). After blotting, membranes were blocked and incubated with mouse primary antibodies followed by horseradish-peroxidase (HRP)-conjugated anti-mouse IgG (KPL). Bands were visualized using SuperSignal® West Femto Trial Kit (Thermo Scientific/Pierce, Rockford, IL Rockford, IL) as an enhanced chemiluminescence substrate for HRP and then scanned using the FluorChem M system (Cell Biosciences, Santa Clara, CA).
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3

Targeted B2M Knockout and CD47 Knock-in

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T cells were edited with B2M intron-targeted RNP (i4) and SEED HDRT encoding CD47. Edited cells were then expanded for seven days and immunomagnetically purified with anti-B2M antibody. Genomic DNA was isolated from non-edited cells, non-purified edited cells, and purified edited cells using a NucleoSpin Tissue Kit (Macherey-Nagel). The HDRT integration site was PCR-amplified from genomic DNA using Ǫ5 High-Fidelity Polymerase (NEB), with an expected amplicon size of ~1kb for non-edited B2M alleles and ~2kb for alleles with HDRT integration. Primers were designed to target sequences upstream and downstream of the HDRT homology arms to avoid amplification of non-integrated repair template. Amplicon size was assessed using gel electrophoresis (0.8% agarose, 125V for 50 min) with SYBR Safe DNA stain (Thermo) using the 1kb Plus DNA ladder (NEB). Gel imaging was performed on a FluorChem M System (Cell Biosciences). Unprocessed gel images are provided in the Supplementary Information.
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