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6 protocols using pcdna3 s33y β catenin

1

Plasmid Transfection for LGR6 Knockdown

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S33Y and pcDNA3-S33Y β-catenin were purchased from Addgene (#19286). The reporter plasmids containing wild-type (CCTTTGATC; TOPflash, #12456, Addgene) or mutated (CCTTTGGCC; FOPflash, #12457, Addgene) T cell factor/lymphoid enhance factor (TCF/LEF) DNA binding sites were purchased from Upstate Biotechnology. Knockdown of endogenous LGR6 was performed by cloning two short hairpin RNA (shRNA) oligonucleotides into the pSUPER-puro-retro vector (OligoEngine, Seattle, WA, USA). Two separate shRNA fragments of LGR6 are listed in Table S5. Plasmid transfection was performed according to the protocol of Lipofectamine 3000 (Life Technologies).
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2

Cloning and Mutagenesis of Wnt Pathway Regulators

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Mouse Axin2 cDNA was made by RT-PCR of total RNA isolated from mouse vagina tissue and was cloned into pIVT vector (Igarashi et al., 2007 (link)) between the SalI and XbaI sites. Axin2V26D mutant construct was made using the QuikChange II XL Site-Directed Mutagenesis Kit (Agilent, Santa Clara, CA). pcDNA3-S33Y β-catenin was purchased from Addgene (Kolligs et al., 1999 (link)). A FLAG tag was added to the C-terminus, a 2X nuclear localization signal was added to the N-terminus, an AgeI restriction site was added to the 5’ end, and an XbaI restriction site was added to the 3’ end of β-catenin-S33Y via PCR. pGEMHE-mCherry-Trim21 purchased from Addgene (Clift et al., 2017 (link)) was digested with AgeI and XbaI to remove the mCherry-Trim21 sequences and β-catenin-S33Y was cloned into the pGEMHE vector between the AgeI and XbaI sites. pFLAG-TNKS-2 was purchased from Addgene (Sbodio et al., 2002 (link)). An AgeI restriction site was added to the 5’ and an Xba1 site to the 3’ end of TNKS-2 via PCR. TNKS-2 was cloned into the pGEMHE vector between the AgeI and XbaI sites. For microinjection, cRNAs were made by in vitro transcription using the AmpliCap-Max T7 High Yield Message Maker Kit (CELLSCRIPT, Madison, WI).
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3

Resveratrol Modulates Autophagy Pathways

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Resveratrol (R5010), cholera enterotoxin, hydrocortisol and CQ (chloroquine) were purchased from Sigma-Aldrich (St. Louis, MO, USA); DMEM/F12, DMEM, Ham's F12 medium, FBS (fetal bovine serum) and BSA (bovine serum albumin) were purchased from HyClone (Beijing, China); Trizol reagent, horse serum, medium 199, antibioticantimycotic, gentamicin, insulin, Lipofectamine 2000, Opti-Mem were purchased from Invitrogen (Carlsbad, CA, USA); EFG and bFGF (Basic fibroblast growth factor) were purchased from PeproTech Inc (Rocky Hill, USA); B-27 was purchased from Gibco (Gaithersburg, MD, USA); The Cell Counting Kit (CCK-8) was purchased from Dojindo Laboratories (Kumamoto, Japan). Aldefluor assay kit and collagenase/hyaluronidase were purchased from StemCell Technologies (Vancouver, Canada); Antibodies to β-catenin was purchased from Bioworld Technology (Minneapolis, MN, USA); Antibodies to cyclin D1, Beclin1 and Atg 7 were purchased from Santa Cruz (CA, USA); Antibodies to LC3 were purchased from Cell Signaling Technology (Danvers, MA, USA). The GFP- LC3-II plasmids were kindly provided by Dr. Tamotsu Yoshimori (National Institute for Basic Biology, Okazaki, Japan). The plasmid of pcDNA3-S33Y β-catenin (Plasmid 19286) was provided by Addgene (MA, USA).
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4

Plasmid and Lentivirus Protocols

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The following plasmids were obtained from Addgene (Cambridge, MA, USA): pUltra-Chili (48687) and pUltra-Chili-Luc (48688, gifts from Malcolm Moore), pSpCas9(BB)-2A-GFP (48138, gift from Feng Zhang [47 (link)]), pcDNA3-S33Y β-catenin (19286, gift from Eric Fearon [48 (link)]), and phL1A-pcDNA3 (12307, gift from Vance Lemmon [49 (link)]). M50 Super 8x TOPFlash (12456) and M51 Super 8x FOPFlash (12457, gifts from Randall Moon [50 (link)]) contain, respectively, eight copies of consensus or mutant TCF/LEF DNA binding sites upstream from sequences encoding firefly luciferase [50 (link)]. The Renilla luciferase-encoding plasmid pRL-CMV (E2261) was purchased from Promega (Madison, WI, USA). The small hairpin RNA (shRNA) transfer vectors containing control or FER-targeting shRNA sequences (FER[978-998]) were generated as described [20 (link),51 (link)]. Lentiviruses encoding GFP and dox-inducible control or FER-targeting shRNAs were packaged in COS-7 cells, as described [52 (link)]. To generate lentivirus encoding firefly luciferase and tdTomato fluorescent protein, COS-7 were transfected with pUltra-Chili-Luc and lentivirus packaging plasmids, as described [52 (link)].
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5

Mammalian expression plasmid transfection

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Mammalian expression plasmids pcDNA3-β-catenin (ID: 16828) and pcDNA3-S33Y β-catenin (ID: 19286) were from Addgene (Cambridge, MA, USA). Plasmids were amplified in an Escherichia coli DH5α strain and purified using a Plasmid Maxi Plus Kit (Qiagen, Limburg, The Netherlands). Plasmids were transfected into cells by Polyethylenimine MAX (Polysciences, Inc., Warrington, PA, USA) according to a manufacturer’s instruction.
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6

Overexpression of β-Catenin in PANC1 Cells

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For stable expression of β-catenin, we used β-catenin pcDNA3 (Plasmid 16828#, Addgene, Cambridge, MA, USA), pcDNA3-S33Y β-catenin (Plasmid #19286, Addgene), the mutant form and pcDNA3 (Invitrogen, USA) as the control vector. The PANC1 cell line, non β-catenin expressing cell line, was seeded in 6-well dishes and then β-catenin was transfected using Lipofectamine 2000 (Thermo Fisher, San Jose, CA, USA). After 48 hours, the cells were harvested and Western blotting assays were performed.
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