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282 protocols using free glycerol reagent

1

Brown Adipocyte Lipolysis Assay

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Primary brown preadipocytes (40,000 cells per well) were plated in a 48-well dish. 24 hours after plating brown preadipocytes were differentiated with adipogenic cocktail (1 μM rosiglitazone, 0.5 mM IBMX, 5 μM dexamethasone, 0.114 μg ml−1 insulin, 1 nM T3, and 125 μM Indomethacin). Cells were re-fed every 48 hours with maintenance cocktail (1 μM rosiglitazone and 0.5 μg ml−1 insulin). Adipocytes were fully differentiated 6 days after initial exposure to adipogenic cocktail. On day 6 post-differentiation, maintenance cocktail was replaced with 300 μl of DMEM/F-12 (ThermoFisher Scientific) supplemented with 2% fatty acid-free BSA, and different doses of NE for 1 hour. Adipocytes were washed twice with warm D-PBS and lysed with lysis solution (0.3 N NaOH, 0.1% SDS) for three hours at room temperature. Glycerol content of the samples was determined using Free glycerol reagent (Sigma) and Glycerol Standard Solution (Sigma) at an absorbance of 540 after incubating sample and standards with Free glycerol reagent for 15 minutes at room temperature in the dark.
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2

Triglyceride Assay for Drosophila Metabolomics

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The TAG assay was adapted from [72 (link)]. Multiple batches of 10 male flies each were processed for TAG analysis. A small scoop of zirconium beads and 300 μl of PBS, 0.05% Tween was added to each tube. The samples were then homogenised using a Precellys homogeniser. For protein estimation, 40 μl of homogenised sample was immediately collected and frozen. The remaining sample was heat inactivated for 10 minutes at 70°C. A volume of 200 μl of the heat-inactivated sample was transferred to fresh tubes. A volume of 4 μl of lipase (25 KU/mL; Merck; 437707) was added to each tube and mixed. The samples were then kept at 37°C overnight. After overnight incubation, the samples were centrifuged at 14,000 rpm for 3 minutes, and the supernatant collected. Each sample was then put in triplicates in a 96-well plate. Different concentrations of glycerol were used as standards. Prewarmed Free Glycerol reagent (Merck; F6428) was then added to the 96-well plate, and the plate was incubated at 37°C for 6 minutes. After a brief spin, absorbance measurements were taken at 540 nm using a Hidex Sense Plate Reader. The Bradford assay was used for protein estimation. Briefly, pre-heat-inactivated sample was centrifuged, and the supernatant put in triplicates in a 96-well plate. Bradford reagent was then added, and absorbance measurements taken at 600 nm.
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Plasma Lipid and Leptin Analysis

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Blood was collected by retro-orbital puncture of anesthetized mice. Plasma levels of nonesterified FA, glycerol, and TAG were measured using the commercially available kits NEFAC (WAKO Chemicals, Germany), TG Infinity Reagent (Thermo Fisher Scientific, MA), and Free Glycerol Reagent (Merck, Darmstadt, Germany). Plasma leptin was determined using a mouse leptin ELISA (catalog no.: 90030; Crystal Chem, IL).
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4

Glycerol Quantification Assay in Mouse VAT

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VAT obtained from mice was finely diced and transferred to wells of 24-well plates containing 1 ml of DMEM with 4.5 g/L d-glucose (Gibco, Life technology, Gaithersburg, MD), and cultured in a humidified atmosphere of 21% O2 and 5% CO2 at 37 C for 1 h as previously described17 (link),45 (link). After refreshing the medium, the tissues were incubated with or without increasing doses of Adm for 24 h and culture medium was collected for glycerol analysis. The glycerol level in culture medium was assessed using Free Glycerol Reagent (Sigma Aldrich, St. Louis, MO, USA) according to manufacture instructions. The absorbance at A540 were read and recorded by a Spectrophotometer CLARIO STAR (BMG Labtech, Inc., Cary, NC, USA) as previously described17 (link).
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5

Lipofectamine-mediated Transfection and Silencing in Adipocytes

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For expression assays, 3T3‐L1 cells, human adipocytes, and HEK-293 AD cells, were transfected with the corresponding plasmid vectors at 2.5 µg/mL using a 7.5:1000 dilution of Lipofectamine 2000 (Invitrogen), and cultured for 48 h prior to the experiments. For silencing studies, cells were transfected with a 7.5:1000 dilution of Lipofetamine RNAiMAX (Invitrogen) and mouse Rab34 siRNA (Dharmacon), mouse UBA1 siRNA (Dharmacon), or control siRNA (Sigma-Aldrich) (scrambled-transfected cells) at 25 nmol/L. Then, cells were kept in culture for 72 h. At the end of the experiments, cells were processed for confocal microscopy and/or immunoblotting as indicated in the corresponding sections. In another set of experiments, cells were collected in radioimmunoprecipitation assay (RIPA) buffer and intracellular concentration of TGs was determined using Triglyceride Reagent (Sigma-Aldrich) and Amplex UltraRed Reagent (Invitrogen), while culture media were analyzed for free glycerol content using Amplex UltraRed Reagent (Invitrogen) and Free Glycerol Reagent (Sigma-Aldrich) as previously described [24 (link)].
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6

Quantifying Cellular Triglyceride Content

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Triglycerides were isolated with Hexan/Isopropanol (3:2). Triglyceride Reagent, Free Glycerol Reagent, and Glyerol Standard (all from Sigma-Aldrich, Munich, Germany) was used to measure cellular triglyceride content of adipocytes according to the manufacturer’s instructions.
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7

Adipose Tissue Lipolysis Assay

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Subcutaneous adipose tissue (SAT), epididymal adipose tissue (EAT), and BAT were excised from 8-week-old male cd47-deficient and WT littermate control mice after a 6-h fast. Tissue was weighed and kept in ice cold PBS until all tissue was collected. Adipose tissue (80–180 mg) was placed in one well of a 24-well plate (n=3 mice/group; all tissue samples from each mouse were triplicated). Tissues were serum starved in Dulbecco's Modified Eagle Medium (DMEM, Gibco, Carlsbad, CA, USA) supplemented with 1% fatty acid-free bovine serum albumin (BSA) for 1 h at room temperature (RT). Tissue was then treated with Krebs Ringer Buffer (125 mM NaCl, 5 mM KCl, 1.8 mM CaCl2, 2.6 mM MgSO4, 5 mM HEPES, pH adjusted to 7.2) in the presence of vehicle or isoproterenol (10 µM, Sigma-Aldrich, St. Louis, MO, USA) as previously described (Guo et al., 2013 (link)). After 2 h, media was collected to measure glycerol release with the Free Glycerol Reagent and appropriate standards (Sigma-Aldrich, St. Louis, MO, USA). Values were normalized to gram tissue weight (n=3 animals/group and n=3 experimental replicates/animal).
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8

Adipose Tissue Glycerol Release Assay

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VAT obtained from mice was finely diced and transferred to 24-well plates containing 1 ml of DMEM with 4.5 g/L D-glucose (Gibco, Life technology, Gaithersburg, MD), and cultured in a humidified atmosphere of 21% O2 and 5% CO2 at 37 C for 1 hour as previously described (15 ,16 ). After refreshing the medium, tissues were incubated for 24 hours and culture medium was collected for glycerol analysis. In some experiments, the VAT was incubated with isoprenaline (30 nM, Sigma Aldrich, St. Louis, MO) for 1 hour and culture medium was collected. The glycerol level in culture medium was assessed using Free Glycerol Reagent (Sigma Aldrich, St. Louis, MO) according to manufacture instructions. The absorbance at A540 were read and recorded by a Spectrophotometer CLARIO STAR (BMG Labtech, Inc., Cary, NC).
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9

Analysis of Lipolysis Signaling Pathway

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Dulbecco’s modified Eagle’s medium (DMEM), GlutaMAX, sodium pyruvate and non-essential amino acids were obtained from Life Technologies. Fatty acid-free, ultra-pure BSA and protease inhibitor cocktail were obtained from Roche. BCS, copper chloride, 8-bromo-cAMP, dibutyryl cAMP, IBMX, isoproterenol, and free glycerol reagent were obtained from Sigma-Aldrich. BDH Aristar Ultra concentrated nitric acid was obtained from VWR. NEFA kits were obtained from Wako. H-89 dihydrochloride, cilostamide, and rolipram were obtained from EMD Biosciences. CAY10499 and cyclic AMP assay kits were obtained from Cayman Chemical. Restriction endonucleases, Phusion High-Fidelity DNA polymerase, T4 DNA ligase, and Gibson Assembly Master Mix were obtained from New England Biolabs. TaKaRa ExTaq DNA polymerase was purchased from Clontech. Primers were purchased from Integrated DNA Technologies. All other materials used in biochemical assays were purchased from Sigma unless otherwise noted. Baculoviral particles were generated using the BaculoGold™ transfection kit from BD Biosciences. All DNA constructs were verified by sequencing by Quintara Biosciences, and all plasmids used for transfections were prepared using the EndoFree Maxi Kit (Qiagen).
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10

Triglyceride Quantification in Milk Lipids

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25 μL of isooctane suspended total milk lipid was taken to dryness, were resuspended in 200 μL dichloromethane containing 15 μL of a 20% nonaethylene glycol monododecyl ether (Sigma Aldrich, St. Louis, MO) dissolved in dichloromethane (wt/vol), and samples were incubated for 5 minutes at 25°C. Samples were taken to dryness at 40°C for 25 minutes ensuring solvent was completely evaporated. Pellets containing triglyceride/nonionic surfactant complexes were reconstituted in 200 μL of ultrapure water without mixing and incubated at 40°C for 10 minutes, followed by a gentle vortex. A regression curve was prepared from 80 nmol of tripalmitin (Sigma Aldrich, St. Louis MO) combined with 25 μL of 20% nonaethylene glycol monododecyl ether in dichloromethane (wt/vol), processed as above, resuspended in 100 μL of ultrapure water, and a standard curve of 20, 10, 5, 2.5, 1.25, 0.625, and 0.3125 nmol tripalmitin was made. Triglyceride from the organic fraction was quantified relative to tripalmitin using a modified colorimetric assay [13 (link)]. Triglyceride Reagent and Free Glycerol Reagent were purchased from Sigma Aldrich (St. Louis, MO) and prepared according to the manufacturer's instructions.
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