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6 protocols using cd3ε 145 2c11

1

Multiparametric Immune Cell Profiling

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Peripheral blood was collected retro-orbitally from isoflurane-anesthetized mice. The blood was treated with ACK lysis buffer for 5 min to remove RBCs, leaving the peripheral blood leukocytes (PBLs). To determine expression of cell surface molecules, we incubated PBLs with mAb at 4°C for 20–30 min, and cells were subsequently fixed for 10 min using Cytofix Solution (BD Biosciences). The following mAb clones were used to stain processed samples: CD11a (M17/4; eBioscience), TLR4 (SA15-21; BioLegend), CD3ε (145-2C11; BioLegend), NK1.1 (PK136; eBioscience), NKp46 (29A1.4; BioLegend), F4/80 (BM8; BioLegend), TLR2 (CB225; BD Bioscience), CD19 (6D5; BioLegend), CD11c (HL3; BD Biosciences), CD4 (GK1.5; BioLegend), Ly6G (1A8; BioLegend), CD127 (A7R34; BioLegend), Ly6C (HK1.4; BioLegend), and CD8α (53-6.7; BioLegend). Flow cytometry data were acquired on a Cytek Aurora (Cytek, Bethesda, MD) and analyzed with FlowJo software (Tree Star, Ashland, OR).
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2

Multi-Parameter Cell Sorting and Analysis

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For cell sorting and analysis, monoclonal antibodies to CD41 (MWReg30, eBioscience), CXCR4 (2B11, eBioscience), CD11b (M1/70, eBioscience), F4/80 (BM8, eBioscience), Gr-1 (RB6-8C5, Biolegend), Ly6C (HK1.4, Biolegend), CD11c (N418, eBioscience), CD45.1 (A20, eBioscience), CD45.2 (104, Biolegend), CD4 (GK1.5, eBioscience), CD8 (53–6.7, Biolegend), INF-γ (XMG1.2, Biolegend), IL4 (11B11, Biolegend), CD34 (RAM34, eBioscience), Sca-1 (D7, Biolegend), c-kit (2B8, Biolegend), CD135 (A2F10, Biolegend), CD3ε (145–2 C11, Biolegend), CD45R (RA3-6B2, Biolegend), TER-119 (Ter-119, Biolegend), IgM (II/41, eBioscience), FγRII (93, Biolegend), IL-7R (A7R34, Biolegend), TNFα (MP6-XT22, Invitrogen), IL-6 (MP5-20F3, Biolegend), OVA257-264 (SIINFEKL) peptide bound to H-2Kb (eBio25-D1.16 (25-D1.16), Invitrogen) and IL-2 (JES6-5H4, eBioscience) were used where indicated.
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3

Multiparametric Immune Cell Profiling

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Peripheral blood was collected retro-orbitally from isoflurane-anesthetized mice. The blood was treated with ACK lysis buffer for 5 min to remove RBCs, leaving the peripheral blood leukocytes (PBLs). To determine expression of cell surface molecules, we incubated PBLs with mAb at 4°C for 20–30 min, and cells were subsequently fixed for 10 min using Cytofix Solution (BD Biosciences). The following mAb clones were used to stain processed samples: CD11a (M17/4; eBioscience), TLR4 (SA15-21; BioLegend), CD3ε (145-2C11; BioLegend), NK1.1 (PK136; eBioscience), NKp46 (29A1.4; BioLegend), F4/80 (BM8; BioLegend), TLR2 (CB225; BD Bioscience), CD19 (6D5; BioLegend), CD11c (HL3; BD Biosciences), CD4 (GK1.5; BioLegend), Ly6G (1A8; BioLegend), CD127 (A7R34; BioLegend), Ly6C (HK1.4; BioLegend), and CD8α (53-6.7; BioLegend). Flow cytometry data were acquired on a Cytek Aurora (Cytek, Bethesda, MD) and analyzed with FlowJo software (Tree Star, Ashland, OR).
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4

Apoptosis and Immunophenotypic Analysis

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For analysis of apoptotic cell death, cells were washed with PBS and resuspended in Annexin V binding buffer, and stained with Annexin V-FITC and propidium iodide (PI) at room temperature for 15 min. For immunophenotypic analysis, single-cell suspensions were prepared and stained with indicated antibodies at 4°C for 30 min. Fluorochrome-conjugated antibodies used were as follows: CD3ε (145-2C11, BioLegend), CD4 (RM4-5, BioLegend), CD8a (53-6.7, BD Pharmingen), CD25 (PC61, BD Horizon) and CD44 (IM7, BD Pharmingen). For intracellular staining of Myc, cells were first stained by specific surface antibodies and then fixed and permeabilized with BD Cytofix/Cytoperm Kit (BD Biosciences) according to the manufacturer’s instructions. Cells were stained with a mouse anti-Myc antibody (9E10, Santa Cruz) and then an Alexa Fluor 647-conjugated anti-mouse IgG antibody (Cell Signaling Technology). Above all, acquisition was performed on an Accuri C6 (BD Biosciences) and flow cytometric sorting was conducted on a FACS Aria (BD Biosciences). Live cells were gated based on FSC and SSC characteristics. All acquired data were analyzed with FlowJo software (TreeStar).
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5

Comprehensive Cellular Flow Cytometry Protocol

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For cellular flow cytometry, mAbs included the following: Thy1.2/CD90 (30-H12, BioLegend), TCRβ (H57, eBioscience), Vα2 (B20.1, BD), CD3ε (145-2C11, BioLegend), CD8α (53.6.7, BioLegend), CD8β (53-5.8, BioLegend), CD4 (GK1.5, BD Biosciences), CD69 (H1.2F3, BioLegend), CD24 (M1/69, BioLegend), and CD5 (53-7.3, BioLegend). Other binding reagents included the following: peanut agglutinin (PNA)-FITC (Sigma-Aldrich), streptavidin-PE and streptavidin-APC-Cy7 (BioLegend), H-2Kb-SIINFEKL (OVA) tetramer, and thymic leukemia antigen (TLA) tetramers (NIH tetramer core facility). For multiplex IP and PiSCES analysis, antimouse Abs are listed in table S1, whereas a similar table for antihuman Abs used in conjunction with Jurkat and JRT3 cell lines was previously published (40 (link)).
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6

Isolation and Purification of Thymocyte and Peripheral T Cell Subsets

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Subsets of thymocytes were isolated by cell sorting as previously described [54 (link)], after cell surface staining using CD4 (GK1.5), CD8 (53–6.7), CD3ε (145-2C11), and CD24 (M1/69) (all from Biolegend). DP cells were CD4+ CD8 int/hi; CD4 SP cells were CD4CD3 hi, CD24 int/lo. Peripheral subsets were isolated after pooling spleen and lymph nodes. T cells were enriched by negative isolation using Dynabeads (Dynabeads untouched mouse T cells, 11413D, Invitrogen). After surface staining for CD4 (GK1.5), CD8 (53–6.7), CD62L (MEL-14), CD25 (PC61) and CD44 (IM7), naïve CD4 + CD62LhiCD25-CD44lo were obtained by sorting (BD FACS Aria). Three cell isolations from independent mice were prepared for each of the three thymocyte subsets.
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