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14 protocols using l leu

1

Quantifying Protein Synthesis via EGF Stimulation

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Cells were washed twice and serum starved for 16–18 h prior to EGF stimulation. Cells were stimulated with EGF in serum-free DMEM low glucose without L-ARG, L-LEU, L-LYS, sodium pyruvate and phenol red (Sigma Aldrich) for 1 h: [3H]Leucine (PerkinElmer, Waltham, MA, USA) was added at the same time as EGF to a final concentration of 5 μCi/ml. Cells were washed three times in ice-cold PBS, lysed using RIPA buffer followed by incubating cells with 10 % trichloroacetic acid (TCA) for 10 minutes to precipitate proteins. Pellets were washed three times in 10 % TCA. Pellets were resuspended in 50 nM NaOH with 1 % Triton X-100 at 65 °C for 30 minutes or until the pellet dissolved. The radioactivity of samples was assessed by measuring the scintillation count using the β-scintillation counter. The results were normalised for protein content using bicinchoninic acid (BCA) analysis.
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2

Bacterial Strains and Chemicals for IDO Study

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The bacterial strains and plasmids used in this study are listed in Table 5. E. coli DH5α was used as a cloning host. E. coli BL21(DE3) was used for expression of ido and mutant genes. The chemicals, including α-KG, L-Ile, L-Leu, L-Nva, L-Nle, D-Ile, PHE, HPHE, NaH2PO4, FeSO₄·7H₂O, NaCl, kanamycin, Isopropyl β-D-thiogalactoside (IPTG), imidazole and LB medium, were purchased from Sigma-Aldrich.
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3

Astrocyte [3H]glutamine Uptake Assay

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Astrocytes were washed twice with Krebs buffer (29.5 mM NaCl, 1.13 mM KCl, 0.3 mM KH2PO4, 0.3 mM MgSO4, 11 mM glucose, 25 mM NaHCO3, 2.5 mM CaCl2) and pre-incubated in this buffer for 15 min at 37 °C. Next, the cells were incubated in the mixture of Krebs buffer supplemented with 0.1 μCi/mL L-[3,4-3H(N)-]glutamine (PerkinElmer, Waltham, MA, USA; specific radioactivity 37 MBq/mL) and 0.1 mM unlabeled glutamine. To block systems other than system N in the experiments analyzing system N-mediated [3H]glutamine uptake, the mixture also contained 10 mM L-Ala and 10 mM L-Leu (Sigma-Aldrich, St. Louis, MO, USA) [9 (link)]. The incubation was terminated after 4 min by a triple wash of the cells using cold Krebs buffer. The astrocytes were lysed by incubation with 0.5 mL of 1 N NaOH and the radioactivity of the cells was measured in a Wallac 1409 Liquid Scintillation Counter (Perkin-Elmer, Turku, Finland).
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4

Optimized Cell Culture Protocol for PAX7 Analysis

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The following materials are used in the cell culture: L-leu (#L8912), lysine (Lys, #L9037), arginine (Arg, #A6969), Collagen Ⅰ (#SCR103), Basic Fibroblast Growth Factor (bFGF, #13256-029), BSA (A1933), and DMSO (#C6295), which were purchased from Sigma-Aldrich, USA. DMEM (#11995065), L-leu-deprived DMEM powder (#88425), fetal bovine serum (FBS, #10099141C), Antibiotics-antimycotic (#15240062), and Dulbecco phosphate-buffered saline (DPBS, #14190144) were purchased from Gibco, Life, Technologies, Grand Island, NY, USA. Culture dish (10 and 6 cm), Cell ware 6, 24, and 96-well plates, Matrigel and cell strainer, were purchased from Corning, NY, USA. Accutase, Cell Detachment Solution was purchased from innovative cell technologies, SD, USA. Mouse monoclonal anti-PAX7 (#sc-81648) was purchased from Santa Cruz Biotechnology, CA, USA. Donkey anti-Mouse IgG (H + L) was purchased from Invitrogen (#A10036, Invitrogen, Carlsbad, CA, USA). DAPI (#C0065), Triton X-100 (#9002-93-1), and Tween 20 (#9008-64-5) were purchased from Solarbio (Beijing, China). CCK 8 was purchased from Good Laboratory Practice Bioscience, Montclair, CA, USA.
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5

Amino Acid and Acetate Acquisition

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L-trp and L-leu (>97% pure) were purchased from Sigma Aldrich Chemical Company, Schnelldorf, Germany. Glucose was purchased from Hänseler, Herisau, Switzerland. 13C-sodium acetate was purchased from ReseaChem, Burgdorf, Switzerland.
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6

Zebrafish Intestinal Digestive Function

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2′,7′-Dichlorodihydrofluorescein diacetate (DCFH-DA) (5 mg/mL, Sigma) was used to label the zebrafish intestines at 7 dpf. Embryos were treated with DCFH-DA in 0.3× Danieau buffer for 2 h. PED6 (D23739, Thermo Fisher) and EnzChek (E6639, Thermo Fisher) were used to test the digestive ability of the intestinal proteins and lipids. Embryos at 7 dpf were treated with 3 μg/mL PED6 or 20 μg/mL EnzChek in a 0.3× Danieau buffer for 3 h. rapamycin was used to inhibit the mTORC1 pathway. Embryos were exposed to 400 and 800 nM rapamycin (Sangon Biotech, China) in a 0.3× Danieau buffer from 10 hours postfertilization (hpf) to 3 dpf. L-Leu and rheb mRNA were used to elevate the mTORC1 pathway. Embryos were injected with L-Leu (500 nM, Sigma) at 30 hpf or rheb mRNA (100 pg and 150 pg) at 1-cell stage, then harvested at 3 dpf.
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7

Biogenic Amine and Amino Acid Analysis

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BA standards (tyramine hydrochloride, 2-phenylethylamine hydrochloride, putrescine dihydrochloride, cadaverine dihydrochloride, histamine dihydrochloride, tryptamine hydrochloride, spermidine trihydrochloride) and amino acid standards (L-Asp, L-Glu, L-Ser, L-Gly, L-His, L-Thr, L-Arg, γ-aminobutyric acid [GABA], L-Ala, L-Pro, L-Tyr, L-Val, L-Met, L-Iso, L-Leu, L-Phe, L-Trp, and L-Lys) were all purchased from Sigma-Aldrich Chemical Co. (St. Louis, MO, USA). Dansyl chloride, perchloric acid, sodium hydrogen carbonate, potassium dichromate, and silver nitrate were purchased from Daejung Chemical Co. (Siheung, Korea). Distilled water, acetone, and acetonitrile (HPLC grade) were purchased from Tedia Co. (Fairfield, OH, USA).
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8

Molecular Profiling of Muscle Cell Differentiation

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L-Leu (purity ≥ 98.5-101.0%), KIC (purity ≥ 98 %), and HMB free acid (purity ≥ 95%) were purchased from Sigma (St. Louis, MO, USA). TRIzol, DNase I, and SYBR Green detection kit were purchased from Invitrogen (Life Technologies, Carlsbad, CA, USA). Protease inhibitor cocktail was purchased from Roche (Basel, Switzerland). Phosphatase inhibitors were purchased from Thermo Scientific (Waltham, MA, USA). Phosphate Buffered Saline (PBS) and Trypsin were also purchased from Wisent. Mesotrione (2-(4-Mesyl-2-nitrobenzoyl)-1,3-cyclohexanedione)-Pestanal©, catalogue No. 33855) was obtained from Fluka (St. Louis, MO, USA). The growth medium used for cell growth consisted of high glucose Dulbecco’s modified Eagle’s medium (DMEM) purchased from Gibco (Life Technologies, Grand Island, NY, USA), 10% fetal bovine serum (FBS) (Gibco #26050-088), and 1% Antibiotic-Antimycotic (Wisent #450-115-EL). The medium used for differentiation of cells was high glucose DMEM supplemented with 2% horse serum (HS) (Gibco #26050088) and 1% Antibiotic-Antimycotic.
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9

Yeast DNA Extraction and Chemical Analysis

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The rTaq DNA polymerase, Takara MiniBEST Agarose Gel DNA Extraction Kit Ver. 3.0, ss-DNA, and RNase A were provided by Takara Bio Inc. (Tokyo, Japan). A yeast DNA Kit used was the product of Omega Bio-tek Inc. (Feyou Biotechnology, Shanghai, China). Lithium acetate dehydrate was purchased from Guangzhou Jinhauda Chemical Co., Ltd. (Guangzhou, China). Polyethylene glycol (MW4000), cetyl-tri-methyl-ammonium bromide (CTAB), Tris-HCl, sodium acetate, ethylene-di-amine-tetra-acetic acid (EDTA), ethidium bromide (EB), and agar were obtained from Sanli Chemical Company (Yangling, China). Bacto-yeast extract, bacto-peptone, and dextrose were purchased from Beijing Aoboxing Bio-tech Co. Ltd. Analytically pure L-Leu, L-Ile, standard hexaldehyde, standard isoamyl alcohol, standard 3-methylbutyl acetate, G4l8, and ampicillin were supplied by Sigma-Aldrich Corporation (Beijing, China).
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10

Cytotoxicity Evaluation of LAO Enzymes

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Cell viability was evaluated by MTS assay as described.43 (link) Jurkat cells (5×104/well) were seeded into a 96-well plate in quadruplicate in both the absence and presence of the inhibitors Z-VAD-fmk (10 μM) (Bachem, Bubendorf, Switzerland) or Kp7-6 (0.1–0.5 mM) (Calbiochem, Billerica, MA, USA) in the culture medium. After an appropriate time of incubation, cells were treated with either ApLAO or CgLAO at different concentrations (0.25–10 μg/ml) for 12–48 h). When required, catalase (1000 U/ml) (Sigma) and/or L-Leu (790 μg/ml) (Sigma) were added to the culture medium containing ApLAO or CgLAO. MCF7 cells (2×104/well) were seeded into a 96-well plate in quadruplicate. The next day, cells were treated as described above for Jurkat cells. Cell viability was assessed using the CellTiter 96 Aqueous One Solution Cell Proliferation Assay (Promega, Madison, WI, USA), in accordance with the manufacturer’s instructions. Absorbance was measured with an automatic microplate reader (Tecan Safire2; Tecan Group Ltd, Männendorf, Switzerland) at a wavelength of 492 nm. Results are presented as percentages of the corresponding vehicle treatment (control cells).
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