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Jmp pro version 11

Manufactured by SAS Institute
Sourced in United States, Japan

JMP Pro version 11 is a statistical discovery software designed for data analysis and visualization. It provides a range of advanced statistical tools and modeling techniques for researchers and analysts to explore, analyze, and interpret complex data sets.

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76 protocols using jmp pro version 11

1

Comparative Transcriptome Analysis of Core Genomes

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All three biological replicates were used to calculate the mean RPKM and standard deviation for each coding sequence in JMP® Pro, Version 11 (SAS Institute Inc., Cary, NC, United States). The RPKM and TPM values were normalized using a log10 transformation for correlation analyses. The 10th and 50th percentiles of the un-normalized RPKM values were used to determine the number of transcripts constituting 90 and 50% of the mRNAs in each organism. The core transcriptome was determined by detecting which core genes were present in 90% of transcripts in all six organisms. While evaluating statistical differences between the core genome and non-core genomes, means comparisons were performed using a Student’s t-test assuming unequal variance in JMP® Pro, Version 11 (alpha 0.05). Correlation matrices analyzing several factors of the core genome, including expression levels (normalized RPKM), codon adaptation index (CAI), gene location (normalized to genome length), and GC content were generated using the corrplot (Wei and Simko, 2017 ) R package. Histograms were generated using JMP® Pro, Version 11 (SAS Institute Inc., Cary, NC, United States).
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2

Statistical Analysis of Experimental Data

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Data were analyzed using JMP Pro Version 11 statistical software (SAS Institute Inc.). The results were expressed as the means and standard deviation (SD) or standard error of the means (SEM), or Median and inter-Quartile range. Significant differences between groups were assessed using the χ2-square test and unpaired Student's t-test. The differences of means among multiple groups were analyzed by using one-way ANOVA and Tukey's post hoc test. P<0.05 was considered to indicate a statistically significant difference.
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3

Biochemical Recurrence in Prostate Cancer

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Descriptive statistics were presented as mean and standard deviation. Patients with prostatic cancers were divided into 2 groups based on biochemical recurrence and non- biochemical recurrence, and descriptive analyses comparing clinical information were performed. Statistical analyses were performed with JMP Pro version 11 (SAS Institute Inc., Cary, NC). Chi-squared or Fisher's exact tests were performed for categorical variables. All tests were two-tailed, and P < 0.05 was considered statistically significant.
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4

Survival Analysis of Treatment Outcomes

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Overall survival (OS) was calculated from the date of diagnosis until the date of death of any cause or last documented follow-up. PFS was calculated from the time of diagnosis until death of any cause or evidence of disease progression or relapse. Statistical analyses were performed using JMP Pro-Version 11 (SAS Institute, Cary, NC, USA) software and EZR on R commander. Baseline patient, disease and treatment related variables were reported using descriptive statistics (counts, medians and percentages). Categorical and continuous variables were compared using Pearson's chi-squared and Wilcoxon / Kruskal-Wallis, respectively. Probability of OS and PFS was computed using the Kaplan-Meier method. Group comparisons were made using the log-rank test. Time to event was calculated from the date of diagnosis until the event of interest or point of last clinical encounter, in which case the event was censored. A multivariable cox regression analysis for PFS was computed incorporating variables with a p value ≤ 0.15 from the univariable model in addition to CD20 expression and rituximab use with results expressed as hazard ratio (HR) with 95% CI. All statistical tests were declared significant at α level of 0.05 or less.
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5

Oxygen Saturation Effects on Metabolism

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Analyses of oxygen consumption and tail-beat rates in relationship to O2 saturation levels were conducted using a repeated-measures ANOVA, followed by Dunnett’s test (control: air saturation of 95%) to estimate the oxygen levels that triggered a change in metabolic and activity rates. All statistical analyses were based on α = 0.05 and were undertaken in JMP Pro, version 11 (SAS).
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6

Analyzing Factors Influencing LRG Levels

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Differences between measurements and groups were tested with the Mann–Whitney U, Kruskal–Wallis, or Steel–Dwass test. Paired t testing was used to determine the level of significance of change in LRG levels over time during the clinical course of disease. A receiver operated characteristic [ROC] curve was generated by plotting the false-positive fraction versus the true-positive fraction for every possible cutoff score,25 (link) and area under the ROC curve [AUC] was calculated. Multivariable logistic regression analysis was performed to investigate factors associated with the increase in LRG; p- values < 0.05 were considered as statistically significant. All analyses were performed using JMP® Pro version 11 software [SAS, Cary, NC].
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7

Risk Factors for Pacing Lead Failure

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Data regarding patient characteristics and various biomarker levels are given as percentage, mean±SD, or median (IQR). We used the chi-squared test to compare the proportion of categorical variables (e.g., complications) between the 2 groups. We used the Mann-Whitney U-test to compare the various biomarker levels between the groups. The Kaplan-Meier method was used to estimate pacing lead survival. We compared freedom from lead complications using log-rank test. Event-free survival in lead failure was calculated from the date of lead implantation to the date of lead failure. We used multivariate logistic regression analysis to analyze the risk factors associated with lead failure, including age <16 years at the time of lead placement, atrial lead, moderate to severe CHD, and ICD lead. Age <12 years and atrial leads were reported as risk factors for lead failure.4 (link),13 (link),14 (link)
Given that only a small number of patients were age <12 years (n=3), we used age <16 years as a variable on multivariate analysis. JMP Pro version 11 (SAS Institute, Cary, NC, USA) was used for all analyses. P<0.05 was considered significant.
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8

Statistical Analysis of NAC, Surgery, and Radiotherapy

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Data were presented as mean, mean ± SD, n or n(%). The required sample size was calculated based on analyses of the mean ± SD age of patients treated with NAC, primary surgery and radiotherapy, and the proportion of patients with stage IIb cancer.
Differences in PFS and OS between the groups were compared using the log-rank test. Patient and tumour characteristics and adverse events were compared using Fisher’s exact test, apart from age and tumour size, which were compared using Student’s t-test.
A P-value < 0.05 was considered to be statistically significant. Statistical analyses were performed using STATA™ software, version 13 (StataCorp LP, College Station, TX, USA) and JMP Pro version 11 (SAS Institute Inc., Cary, NC, USA).
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9

Survival Analysis of Induction Chemotherapy

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Overall survival (OS) was calculated from the date of the start of induction chemotherapy until the date of death of any cause or last documented follow-up. Disease free survival (DFS) was calculated from the delivery of induction chemotherapy until death of any cause or evidence of disease relapse. Baseline patient, disease and treatment related variables were reported using descriptive statistics (counts, medians and percentages). Categorical and continuous variables were compared using Pearson's chi-squared and Wilcoxon / Kruskal-Wallis, respectively. Probability of OS and DFS was computed using the Kaplan-Meier method. Group comparisons were made using the log-rank test. Statistical analyses were performed using JMP Pro-Version 11 (SAS Institute, Cary, NC, USA) software and EZR on R commander.
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10

Statistical Analysis of Allogeneic Hematopoietic Cell Transplantation

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Baseline patient, disease and treatment related variables were reported using descriptive statistics (counts, medians and percentages). Categorical and continuous variables were compared using Pearson’s χ2 and Wilcoxon/Kruskal-Wallis, respectively. Probability of OS was computed using the Kaplan-Meier method. Group comparisons were made using the log-rank test. Time to event was calculated from the date of transplant until the event of interest or point of last clinical encounter, in which case the event will be censored. Cumulative incidence was computed as competing events using Grey’s model, considering death as a competing event for relapse and relapse as a competing event for NRM. Univariable and multivariable analyses were performed using Cox proportional hazard regression modelling and expressed as HR with 95%CI and P value. Any variable with a P ≤ 0.1 was incorporated into the multivariable model in a stepwise selection process. Thresholds of ALC recovery post HCT as well as infused allograft characteristics, if present, were assessed using the ROC and AUC for the end point of relapse. Statistical analysis were performed using JMP Pro Version 11 (SAS Institute, Cary, NC, United States) software and EZR on R commander version 1.28[22 (link)].
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