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LC3-II is a protein that serves as a marker for the process of autophagy, a cellular mechanism responsible for the degradation and recycling of damaged or unwanted cellular components. It plays a crucial role in the formation of autophagosomes, which are vesicles that engulf and transport cargo to be degraded. LC3-II is widely used in research to monitor and quantify autophagic activity.

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9 protocols using lc3 2

1

Scutellarin Ameliorates Diabetic Neuropathy

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Scutellarin (purity 98%) was purchased from Honghe Qianshan Bioengineering Co., Ltd. (Honghe, China). Streptozocin (STZ) and rosiglitazone were obtained from Multi Sciences (Lianke) Biotech, Co., Ltd. (Hangzhou, China). Antibodies to detect β-actin, procaspase-3, procaspase-8, procaspase-9, cleaved caspase-3, cleaved caspase-8, cleaved caspase-9, Bax, Cyt-C, Bcl-2, Beclin-1, and LC3-II were ordered from Santa Cruz Biotechnology. The procaspase-12 polyclonal antibody was ordered from Abcam Company. Adult male Sprague-Dawley (SD) rats (180 to 200 g) were obtained from the Experimental Animal Center of Kunming Medical University, China. Two weeks after the adaptive feeding of the rats, they were randomly divided into control group, model group, SCU low-dose (100 mg/kg/d), high-dose (200 mg/kg/d) treatment group, and rosiglitazone (5 mg/kg/d) positive control group (each group of ten). The model group was given a high-sugar and high-fat diet for 8 weeks and injected with STZ by 35 mg/kg intraperitoneally, while the control group was given a normal diet. The SCU groups were administered orally for 8 weeks [12 (link)].
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2

Propranolol's Apoptotic and Autophagic Effects

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Propranolol was obtained from the Chinese materials research center (Beijing, China). Fetal bovine serum (FBS) was got from Gibco, Gaithersburg, MD, USA). N-Acetyl-L-cysteine (NAC), 3-(4, 5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT), Hoechst 33258 staining, and Annexin V-PE Apoptosis Detection Kit were purchased from Beyotime Institute of Biotechnology (Shanghai, China). The enhanced chemiluminescence (ECL) were purchased from Beyotime Institute of Biotechnology (Shanghai, China). JNK inhibitor (SP600125) and 3-MA (3-Methyladenine) were obteined from sigma (St. Louis, MI, USA). Antibodies against Cyclin B1, phospho-cdc2, cdc2, JNK, phosphorylated JNK, and p21 were obtained from Cell Signaling Technology (Beverly, MA, USA). Antibodies against Cdk1, Bcl-2, cleavage caspase-3, cleavage caspase -8, cleavage caspase -9, BAX, LC3-I, LC3- II, Becline-1, p62, GAPDH were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). All other common chemicals and buffers were from Boster (Wuhan, China).
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3

Macrophage Infection Imaging Assay

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Macrophages were seeded on coverslips and treated with 100 μM simvastatin overnight as above. Cells were then infected with green fluorescent protein (GFP) expressing- L. major (IL81) GFP-IL81 (MHOM/IL/81/FEBNI) at MOI of 10. After 24 hours, cells were washed and fixed in 4% paraformaldehyde followed by labelling of phagosome markers with fluorescent antibodies against Lysosome Associated Membrane Protein-3 (LAMP-3, Santa Cruz) and a lysosomal protease (Cathepsin D, Santa Cruz). Macrophages were also labelled for Light Chain 3-II (LC3-II, Santa Cruz), a marker for autophagy. These markers were then visualized by counter-stained with Alexa 546 antibodies (Molecular probes, Invitrogen) followed by nuclear stain (DAPI). Coverslips were then mounted using mowiol-containing anti-fade on glass slides. Images were captured under Carl Zeiss 510 confocal microscope and analysed using Zen Blue software as previously described14 (link).
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4

Western Blot Analysis of Cellular Proteins

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Cell lysates were normalized to protein prior to western blotting and were probed for -actin according to published methods (Epperly et al., 2001) . Cell lysates or isolated mitochondria were mixed with Laemmli sample buffer (1:1) and boiled for 5 min. Ten g of each sample was subjected to 4-20% SDS-polyacrylamide gel electrophoresis, transferred onto nitrocellulose membranes and blocked with 3% nonfat milk. Blots were incubated with primary antibodies (1: 2,000) for at least 2 h prior to rinsing and then incubated with horseradish peroxidase (HRP) conjugated secondary antibodies (1:10,000) for 1 h at room temperature. MnSOD, LC3-I, LC3-II and HRP-conjugated antibodies were purchased from Santa Cruz Biotechnology and detected using chemiluminescence according to the manufacturer's instructions (Western Lighting; Perkin Elmer).
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5

Profiling Protein Expressions in SCC Cells

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To examine the protein expressions in transfected SCC-1 and SCC-9 cells, western blotting assay was performed. Briefly, the cells were lysed and lysates were analysed through BCA assay for protein quantification. Around 40 μg of proteins from each sample were separated by SDS-PAGE and electrophoretically transferred to nitrocellulose membranes (Bio-Rad Laboratories, Hercules, United States). These membranes were then blotted with primary antibodies of Bax, Bcl-2, LC3-I, LC3-II and Beclin-1 (Santa Cruz, CA, USA) having 1 : 1000 dilution. Thereafter, secondary antibody treatment was performed at 4°C overnight. Finally, an enhanced chemiluminescence reagent (Amersham, Piscataway, NJ, United States) was used for determination of protein bands.
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6

Immunostaining of Cochlear Sections

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The cochlear sections (5 μm) were washed with PBS (0.1 M) 3 times, and then blocked with 10% goat serum for 30 min at room temperature. The tissue was incubated with primary antibodies against LC3-II (1 : 100; Santa Cruz Biotechnology) and myosin VI (1 : 400; Proteus Biosciences). After being washed with PBS for 3 times, the sections were incubated with Cy3- or Alexa Fluor 488-conjugated secondary antibody (1 : 1000; Life Technologies) at room temperature in the dark for 1 h. DAPI (2 mg/ml; Beyotime) was used to stain the nuclei. Sections were visualized using a confocal microscope (FV1200, Olympus, Tokyo; Japan).
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7

Bisphenol A Oxidative Stress Pathway

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RPMI-1640, streptomycin, penicillin, and fetal bovine serum (FBS) were obtained from GE Healthcare (Logan, UT, USA). Bisphenol A (BPA) and astaxanthin were from Sigma-Aldrich (St. Louis, MO, USA). JNK, ERK, p38 MAPK, NF-κBp65, p-JNK, p-ERK, p-p38 MAPK, p-NF-κBp65, Beclin-1, β-actin, and LC3-II antibodies were obtained from Santa Cruz Biotechnology (Paso Robles, CA, USA). HRP goat anti-mouse and -rabbit IgG antibodies were purchased from Abcam (Cambridge, MA, USA). Bay 11-7082, N-acetylcysteine (NAC), and PD98059 were from Tocris (Minneapolis, MN, USA). CM-H2DCFDA was purchased from Invitrogen (Carlsbad, CA, USA).
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8

Hypoxia-Induced Protein Expression

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According to the manufacturer's instructions, expressions of relevant proteins were measured by western blot. Lung tissue were incubated with rabbit polyclonal antibodies against hypoxia‐inducible factor‐1α (HIF‐1α), mitochondrial outer membrane 20 (Tom20), iron‐sulfur cluster assembly enzyme‐2 (ISCU2), Bcl‐2, Beclin‐1, LC3II, and BNIP3 (Santa Cruz Biotechnology, Inc., Dallas, TX, USA).
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9

Osteosarcoma Cell Lines Autophagy Assay

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Human osteosarcoma cell lines (Saos-2 and MG-63) were obtained from the Cell Resource Center of the Chinese Academy of Medical Sciences. The cells were cultured in Eagle's Minimum Essential Medium (Invitrogen) or McCoy's 5A Modified Medium (Invitrogen) supplemented with 10% FBS (GIBCO), and were incubated at 37°C with 5% CO2. Antibodies against GAPDH, LC3-II and p62 were obtained from Santa Cruz Biotechnology and rapamycin was purchased from Sigma–Aldrich. The coding sequence of microtubule-associated protein 1-LC3 fusion with GFP was synthesized and cloned into pcDNA3.1(+) to construct the LC3-GFP-expressing plasmid.
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