The largest database of trusted experimental protocols

10 protocols using phospho bad

1

Western Blot Analysis of TCL1 Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Equal amounts of protein were electrophoresed in SDS-polyacrylamide gels and blotted onto nitrocellulose filters (Bio-Rad). Membranes were blotted overnight at 4°C with primary antibodies. The employed antibodies were the following: anti-human TCL1 (27D6) from Areta International; Akt (cat. 9272), phospho-Akt (cat. 4058), ERK (cat. 9102), phospho-ERK (cat. 9101), Bcl-2 (cat. 3498), Mcl-1 (cat. 5453), and phospho-Bad (cat. 9295) from Cell Signaling Technology; PARP (cat. NB100-111) from Novus Biologicals; caspase-9 (cat. RB1205P1) by Neo Markers; and IkBα (cat. sc-371), β-actin (cat. sc-130656), anti-mouse IgG-HRP (cat. sc-2005) and anti-rabbit IgG-HRP (cat. sc-2030) from Santa Cruz Biotechnology. For immunodetection, Pierce ECL plus or Super Signal West Femto chemiluminescent substrates (Thermo Scientific) and GE Healthcare films were used. Protein bands were quantified by scanner densitometry (GS-710, Bio-Rad) and analyzed with Quantity One software (Bio-Rad). TCL1 OD values were first normalized on β-actin expression and then on control (ctrl) TCL1/β-actin ratio.
+ Open protocol
+ Expand
2

Bakuchiol Modulates Apoptosis Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Dulbecco modified eagle medium (DMEM), Ham’s F-12 (F-12) medium, and fetal bovine serum (FBS) were purchased from Gibco BRL (Grand Island, NY, USA). Bakuchiol was purchased from Enzo Life Sciences Inc. (Farmingdale, NY, USA). Antibodies against poly (ADP-ribose) polymerase (PARP), B-cell lymphoma (Bcl)-2, Bcl-2-associated death promoter (Bad), and phospho-Bad were obtained from Cell Signaling Technology (Beverly, MA, USA). Antibodies against beta-actin and horseradish peroxidase-conjugated secondary antibodies were obtained from Santa Cruz Biotechnology Inc. (Santa Cruz, CA, USA). Streptozotocin (STZ), losartan potassium, psoralen, and isopsoralen were obtained from Sigma-Aldrich (St. Louis, MO, USA).
+ Open protocol
+ Expand
3

Investigating Apoptosis Signaling Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were lysed in radioimmunoprecipitation (RIPA) buffer (20 mM Tris, 150 mM NaCl, 1% NP-40, 1 mM NaF, 1 mM Sodium phosphate, 1 mM NaVO3, 1 mM EDTA, 1 mM EGTA), supplemented with protease inhibitor cocktail (Roche, Indianapolis, IN), phosphatase inhibitor cocktail 2 (Sigma-Aldrich) and 1 mM phenylmethanesulfonyl fluoride (PMSF). Proteins were analyzed by immunoblotting as previously described [29 (link)]. The following antibodies were used: phospho-ASK1 (Ser83), phospho-ASK1 (Thr845), ASK1, phospho-ATF2 (Thr67/71), phospho-Bad (Ser112), BCL2, BIM, phosopho-eIF2α (Ser51), GAPDH, JNK, phospho-JNK (Thr183/Tyr185), p38 MAPK, phospho-p38 MAPK (Thr180/Tyr182), MCL1, PARP and cleaved PARP, PERK, phospho-PRAS40 (Thr246), phospho-Rb (Ser780), XIAP (Cell Signaling Technology, Danvers, MA), β-actin (Sigma-Aldrich), Rb and ATF4 (Santa Cruz Biotechnology), phospho-GSK3β (Tyr216) (Abcam, Cambridge, MA), Noxa (Novus Biologicals, San Diego, CA), phospho-Rb (Thr821) (Life Technologies, Camarillo, CA), RNAPII, phospho-RNAPII (Ser2), phospho-RNAPII (Ser5) (Covance, Princeton, NJ), and horseradish peroxidase-conjugated anti-mouse and anti-rabbit antibodies (BioRad). Densitometry was performed using ImageJ software (Bethesda, MD).
+ Open protocol
+ Expand
4

Western Blot Analysis of Apoptosis Regulators

Check if the same lab product or an alternative is used in the 5 most similar protocols
Samples probed with primary antibodies against phospho-AKT (Ser473), AKT, phospho-ERK (T202/Y204), ERK, p38 MAPK, BCL-w, BID, BIM, BAD, phospho-BAD (Ser 136), XIAP, Dual phospho-p38 MAPK (Cell Signaling Technology, MA), HIF-1α, HIF-2α, Bcl-2, Bcl-xL, Bax, (Santa Cruz Biotechnology, Dallas, TX), BAK (BD Biosciences, San Jose, CA), or E7 (gift from Dr. Ju-Hong Jun). Antibodies were diluted 1:1000, and bands were visualized by enhanced chemiluminescence (Elpis Biotech, Daejeon, Korea).
+ Open protocol
+ Expand
5

Cardiac Myocyte Protein Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein samples were extracted from cultured and treated cardiac myocytes and 40 μg of protein were subjected to SDS-PAGE (10% acrylamide) and electrotransferred onto PVDF membranes. Membranes were probed overnight at 4°C with specific primary antibodies in TTBS with 1% of BSA. CD40lg antibody was from sigma. BAD, phosphoBAD, Xiap, phosphoERK1/2 and ERK1/2 primary antibodies were from Cell Signaling. Detection was performed with the enhanced chemiluminiscence reagent ECL-plus (Amersham Bioscience) in the ImageQuant LAS 4000 mini (GE Healthcare). For quantification, the images were analyzed with “Image J” software using alpha-tubulin (Sigma) or GAPDH (Genetex) as housekeeping loading control.
+ Open protocol
+ Expand
6

Western Blot Analysis of Cellular and Exosomal Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells or exosomes were lysed in 2X Laemmli buffer (4% SDS, 20% glycerol, 10% 2-mercaptoethanol, 0.02% bromophenol blue and 120mM Tris HCl). Proteins were separated under reducing conditions in 8, 10, 12 or 15% SDS-PAGE gels, transferred onto nitrocellulose membranes, detected with AKT (pan; C67E7; 1:1000), phospho-AKT (Ser473; D9E; 1:1000), Bad (D24A9; 1:1000), phospho-Bad (Ser136/99; D25H8; 1:1000), cytochrome C (4272; 1:1000; Cell Signaling Technology, Danvers, USA), Alix (3A9; 1:500), TSG101 (4A10; 1:500; Abcam, Cambridge, UK), CD63 (Ts63; 1:500), CD81 (1.3.3.22; 1:500; Thermo Fisher, Waltham, USA), GM130 (35/GM130; 1:500; BD Biosciences, Oxford, UK), α-SMA, (1A4; 1:2000; Sigma-Aldrich, Saint Louis, USA), FN1-EDA (MAB1940; 1:2000; Merck Millipore, Burlington, USA), palladin (1E6; 1:1000; Novus Biologicals, Littleton, USA), Vimentin (Vim 3B4; 1:1000; Dako, Glostrup, Denmark) primary antibodies and horseradish peroxidase-conjugated secondary antibodies (1:4000; Dako, Glostrup, Denmark). Specific signal was visualized using the SuperSignal West Dura Chemi-luminescent detection kit (Thermo Scientific, Waltham, USA). Membranes were probed for β-actin (C4; 1:5000; BD Biosciences, San Jose, USA), HSP90 (1:1000; Cell Signaling Technology, Danvers, USA) or HSC-70, (B-6; 1:2000; Santa Cruz Biotechnology, Dallas, USA), as loading controls.
+ Open protocol
+ Expand
7

Modulatory Effects of α-Tocopherol on NMBA-Induced Carcinogenesis

Check if the same lab product or an alternative is used in the 5 most similar protocols
N-nitrosomethylbenzylamine (NMBA) was purchased from Ash Stevens Inc. (Detroit, MI, USA). α-Tocopherol (α-T) with purities of 95.5% was purchased from Sigma Aldrich (St. Louis, MO, USA). in vitro studies, α-Tocopherol was purified by flash chromatography to purities > 99%. Primary antibodies against PCNA, PPARγ, PTEN, phospho-Akt (Ser473), phospho-mdm2 (Ser166), phospho-p53 (Ser15), p21 Waf1/Cip1, phospho-Bad (Ser136), Bax, Bcl-2, phospho-cdc2, phospho-cdc25C, and HRP-labeled secondary antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Antibodies for immunohistochemistry against phospho-Akt, PPARγ, and p53 were purchased from Merck KGaA (Darmstadt, Germany) or LifeSpan BioSciences. Inc. (Seattle, USA). The HRP-labeled anti-β-actin antibody was from Sigma-Aldrich (St. Louis, MO, USA). The PPARG-specific agonist Rosiglitazone (RGZ) and antagonist GW9662 (GW) were purchased from Selleck Chemicals (Houston, TX, USA).
+ Open protocol
+ Expand
8

Evaluation of Anti-Cancer Drugs

Check if the same lab product or an alternative is used in the 5 most similar protocols
Ubenimex was provided by Shenzhen Main Luck Pharmaceuticals Inc. (Shenzhen, China). 5-fluorouracil was purchased from Xudong Haipu pharmaceutical Co., LTD. (Shanghai, China). Cisplatin and Oxaliplatin were obtained from Qilu Pharmaceutical Co., Ltd. (Jinan, China). Primary antibodies against human Pim-3, BCL-XL, BCL-2, Bad, and phospho-Bad were purchased from Cell Signaling Technology (Beverly, MA). Antibodies against human CD13, β-actin, P-gp, MRP2, MRP3 and ABCG2 were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Horseradish Peroxidase (HRP)-conjugated Affini-pure Goat Anti-Rabbit IgG (H+L) was acquired from Proteintech (Chicago, USA).
+ Open protocol
+ Expand
9

Apoptosis signaling pathway analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Dulbecco’s modified Eagle’s medium was obtained from Life Technologies (Grand Island, NY, USA); antibodies against caspases, phospho-ERK1/2, phospho-JNK, phospho-p38, Akt, phospho-Akt, phospho-Bad, HER2 and phospho-HER2 were obtained from Cell Signaling (Beverly, MA, USA); and those against c-Jun, survivin, XIAP, Bcl-2 and PARP were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Resveratrol was purchased from Calbiochem (San Diego, CA, USA). All other chemicals including docetaxel were purchased from Sigma Chemicals (St. Louis, MO, USA).
+ Open protocol
+ Expand
10

Radiation and PI3K/Akt/mTOR Inhibitor Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Radiation treatment was performed with a 6 MV-X ray source (Varian Medical Systems, California, USA), and the cells were irradiated at a dose rate of 0.2 Gy/min. PKI-587 (MeDeCm Express, USA) was dissolved in dimethyl sulfoxide at 2 mM and stored at -20°C. Antibodies to Ki67, PI3Kp110α, PI3Kp110γ, Akt, phospho-Akt (Ser473), mTOR, phospho-mTOR (Ser2448), Bad, phospho-Bad, Caspase-3, Cleaved Caspase-3, Caspase-9, Cleaved Caspase-9, PARP, and Cleaved RARP were purchased from Cell Signaling Technology, USA. Antibodies to phospho-Rb, Rb, Cyclin D1, phospho-DNAPKcs (Ser2056), DNAPKcs, phospho-ATM (Ser1981), ATM, phospho-ATR (Ser428), and ATR were acquired from Abcam, USA. Antibodies to p70S6K, phospho-S6K1 (T421 + S424), eIF4EBP1 and phospho-eIF4EBP1 were purchased from Boster Biological Technology, China. γ-H2AX was obtained from Biolegend Biological Technology, USA. β-actin was obtained from Biosharp Life Science, China. SP-9000 was obtained from Zhongshan Gold Bridge.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!