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16 protocols using tnfr1

1

Urinary Biomarkers Measured in Mice

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Urine was collected by metabolic caging to measure the urinary albumin concentration and to calculate the urinary albumin excretion rate (UAER). Mice were single-housed in metabolic cages for 18 hours on days 2-3, 6-7, 16-17, and 36-37. Urinary markers were measured by ELISA: albumin (Bethyl Laboratories, cat.no. E90-134), Cystatin C (R&D systems, Minneapolis, MN Cat. number MSCTCO) and TNFR1 (R&D systems, Minneapolis MN Cat. number MRT10). Urinary creatinine was measured by high-performance liquid chromatography (HPLC). Creatinine was measured in serum by acetonitrile deproteinization, followed by isocratic, cation exchange HPLC as previously described [20 (link)].
Blood plasma was prepared from blood samples collected on days 7, 14, 21, 28, and 42. Serum Amyloid P (SAP) was measured by ELISA (Genway, San Diego, CA). Cystatin C was measured using ELISA (R&D systems, Minneapolis, MN Cat. number MSCTCO).
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2

Cytokine and Chemokine Profiling

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The following cytokines/chemokines were measured by sandwich ELISA kits: IL-18 (R&D), MCP-3 (R&D), TNFR1 (R&D).
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3

NK Cell Supernatant-Mediated Dendritic Cell Maturation

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Blocking studies were performed with cell-free supernatants obtained from freshly isolated NK cells activated overnight in serum-free AIM-V® medium and IL-2 (1.000 U/ml) supplemented with FMKp (10 μg/ml) or poly(I:C)HMW (50 μg/ml). The receptor-blocking was performed by pre-incubating iDC with blocking antibodies for 20 min before their addition into flat-bottom 96-well plates containing the cell-free NK cell supernatant supplemented with IL-4 (500 U/ml) and GM-CSF (500 U/ml). The following receptor blocking antibodies were used: IFNGR1 (20 μg/ml), TNFR1 (20 μg/ml), TNFR2 (20 μg/ml), or isotype control (all purchased from R&D systems). The blocking of the cytokines (IFN-γ and TNF-α) in the NK cell-derived supernatants was performed by pre-incubating the supernatants with anti-TNF-α (20 μg/ml; BD) or anti-IFN-γ (10 μg/ml; BD) before adding the iDC. As reference value, iDC were incubated with NK cell-derived supernatant in the absence of blocking agents. As a negative control, iDC were incubated with medium supplemented with FMKp or poly(I:C) and IL-2 (control ‘supernatant’). After 48 h of maturation, the supernatant was harvested to determine the DC cytokine and chemokine profiles.
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4

Comprehensive Immunoblotting Analysis Protocol

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Immunoblotting was performed essentially as previously described [68 (link)]. The primary antibodies used for immunoblotting were shown as following: β-actin (Sigma-Aldrich Inc., St. Louis, MO, USA), BCL2L1, BID (BD Pharmingen Technical, San Jose, CA, USA), BAX, BAK, BCL2, SIRT3, TNFR2, DR4, DR5, JNK, p38 MAPK, ERK, p-JNK, p-p38 MAPK, p-ERK, caspase-3, caspase-8 (Cell Signaling Technology, Beverly, MA, USA), NOX4 (Novus Biologicals, Centennial, CO, USA), FADD, TNF-α, FasL, Fas, PP2Acα, MCL1, tristetraprolin (TTP), PARP, TRAIL (Santa Cruz Biotechnology, Santa Cruz, CA, USA), and TNFR1 (R&D Systems, Minneapolis, MI, USA). Protein bands visualization was done with enhanced chemiluminescence substrate (Perkin Elmer. Waltham, MA, USA). Each immunoblot was performed no less than three times.
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5

Multicolor Flow Cytometry Assay

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PBS (#D8537), Hoechst 33342, and FITC-labeled 40-kD dextran (#FD40S) were purchased from Sigma-Aldrich. TAPI-1 (#BML-PI134) was from Enzo Life Sciences. EthDIII (#B-40050) was from Biotium/Hölzel Diagnostika. TNFR1 (#DY-425) ELISAs were from R&D Systems. CFSE was from eBiosciences. zVAD-fmk (#N-1510) was from Bachem. TPCA-1 (#Cay-15115) was from Biomol/Cayman Chemical. Human and mouse TNF was purchased from ImmunoTools.
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6

Cytokine and Chemokine Profiling

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The following cytokines/chemokines were measured by sandwich ELISA kits: IL-18 (R&D Systems, Minneapolis, MN, USA), MCP-3 (R&D), TNFR1 (R&D), TREM-1 (R&D), procalcitonin (PCT) (IBL-America, Minneapolis, MN, USA).
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7

Inflammatory Biomarkers and cEEG in SAH

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As part of a separate prospective study, we collected serum measures of inflammation at pre-specified time points for SAH patients enrolled between May 2008 and June 2010.13 (link) Serum samples were assayed using enzyme-linked immunoassays for high sensitivity C-reactive protein (hsCRP, BioCheck; normal range, <3.0 mg/L) and tumor necrosis factor TNF receptor 1 (TNF-R1; R&D Systems; Minneapolis, MN), and an immunoturbidmetric assay for transthyretin levels (TTR, also known as prealbumin; Cobas-Integra 400 Plus Chemistry Analyzer; normal range, 17-40 mg/dL). Given the time frame of cEEG monitoring we restricted the comparison between inflammatory serum markers and cEEG findings for the purposes of this study to measurements taken between days 4 to 7 (phase 2) and days 8 to 10 (phase 3). In the primary analysis we compared serum biomarkers to findings on EEGs obtained within 24 hours of measuring the serum markers. In secondary analyses we compared the same serum markers to EEGs obtained on the day following the serum marker measurement.
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8

Cytokine Profiling in MDM Infection

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Culture supernatants of 1 × 106 MDMs/mL (per condition) were collected after 24 h of infection and stored at −70 °C until the analysis. The concentrations of TNF, TNFR1, TNFR2, IL-10, IP-10, CCL2, IL-8, and CCL19 were measured using a sandwich-type immunoassay (ELISA) according to the manufacturer’s instructions. Briefly, ELISA microplates with 96 wells were coated overnight at 4 °C with one of the capture antibodies specific to TNF, IL-10, IFN-γ, CCL2, IL-8 (BioLegend, San Diego, CA, USA), TNFR1, or TNFR2 (R&D Systems, Minneapolis, MN, USA); for CCL19, a kit with pre-coated 96-well microplates was used (Thermo Fisher Scientific, Waltham, MA, USA). Plates were blocked with 1% FBS in PBS for 1 h at room temperature (RT), after which the supernatants were added and incubated for 2 h at RT. Each protein was recognized using a specific biotinylated antibody. Quantification was performed using avidin–HRP conjugate for each ELISA kit, and the tetramethylbenzidine colorimetric substrate was used to develop the blue color. The optical density (450 nm) was measured using a microplate reader (Imark, Bio-Rad, Hercules, CA, USA).
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9

Biomarker Changes in Longitudinal Study

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All subjects underwent blood biomarker measurements at baseline and 1 year. Participants fasted for 8 h before the blood draw, and the aliquoted serum was frozen and stored at −80°C until the tests were performed. Inflammatory status was assessed by serum levels of Dkk-1, soluble tumor necrosis factor-α receptor-1 (TNF-R1, both R&D Systems, Minneapolis, MN, United States), and interleukin-6 (high sensitive IL-6, eBioscience, San Diego, CA, United States) via ELISA. The endocrine markers insulin-like growth factor-1 (IGF-1) and dehydroepiandrosterone sulfate (DHEA-S) were quantified using commercial ELISA assays (BioVendor, Brno, Czech Republic and Abcam, Cambridge, United Kingdom, respectively). All biomarkers were measured in duplicates according to manufacturers’ recommendations, and the average value was reported for all assays. Detection limits were as follows: DHEAS, 0.2 μmol/L; Dkk-1, 30 pg/ml; IGF-1, 2 ng/ml; IL-6, 0.1 pg/ml; TNF-R1, 30 pg/ml.
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10

Osteogenic Differentiation of Murine BMSC

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Primary murine bone marrow stromal cells (BMSC) were differentiated to osteogenic cells using standard osteogenic medium in DMEM (Invitrogen, Darmstadt, Germany) for 7 days.(8 (link),12 (link)–14 (link)) Before treatment, cells were switched to DMEM containing 1% FCS overnight and then treated with 1 μg/mL LPS (Sigma-Aldrich) or 50 ng/mL TNF-α (R&D Systems, Frankfurt, Germany) for 48 hours. In some experiments, BMSC were isolated from TLR2/4 KO mice (C57BL/6 backgroud). To block TNF-α actions, cells were pretreated for 2 hours with 1 μg/mL of soluble TNF receptors (TNFR1 and TNFR2, both from R&D Systems).
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