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Agilent 5973 mass spectrometer

Manufactured by Agilent Technologies
Sourced in United States

The Agilent 5973 mass spectrometer is an analytical instrument designed for the detection and identification of chemical compounds. It utilizes electron ionization techniques to generate and analyze charged molecular fragments, providing data on the molecular weight and structure of the sample.

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12 protocols using agilent 5973 mass spectrometer

1

Comprehensive Characterization of Catalysts

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To record the XRD patterns of the catalysts, D8 Advance, Bruker (Germany) apparatus with monochromatic high-intensity Cu Kα radiation (l = 1.5406 nm), an accelerating voltage of 45 kV, and an emission current of 40 mA was applied. The functional groups of synthesized samples were assessed by a Brucker FT-IR model Tensor 27 (Germany). The SEM, EDX, and TEM images of the synthesized samples were detected on the Tescan apparatus with a model of MIRA 3 (Czech Republic) and JEOL JEM-2100 apparatus acting at 200 kV (Japan), respectively. In addition, the N2 adsorption/desorption isotherms of the prepared materials were determined using the Micromeritics instrument (Gemini VII (USA)). DRS UV–Vis spectra of the synthesized materials were determined using Analytik Jena spectrophotometers model S 250 (Germany). The PL spectra were recorded by a Perkin Elmer spectrometer with the model LS45 (USA). Gas chromatography-mass spectrometry (GC–MS) analysis was accomplished with Agilent 6890 gas chromatograph along with an Agilent 5973 mass spectrometer (Agilent Technologies, Palo Alto, Canada).
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2

GC-MS Analysis of Monosaccharides in Ganoderma Supplements

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Compositional monosaccharides of polysaccharides in G. lucidum fruiting dietary supplements were investigated by using GC-MS analysis according to previous report with minor modification20 (link), 21 (link). Briefly, the sample (3.0 mg) was hydrolyzed with 2.0 M TFA (1.0 mL) at 95 °C in a sealed tube for 10 h. Then the hydrolysates were washed with methanol and evaporated to dryness before derivation with hydroxylamine hydrochloride and acetic anhydride at 90 °C for 30 min. Furthermore, the derivatives of mixed monosaccharide standards (1.0 mg/mL of Ara, Fuc, Gal, Glc, and Man, respectively) were prepared as described above. The derivatives were analyzed by using an Agilent 6890 gas chromatography instrument coupled to an Agilent 5973 mass spectrometer (Agilent Technologies, Palo Alto, CA). A capillary column (30 m × 0.25 mm, i.d.) coated with 0.25 μm film 5% phenyl methyl siloxane was used for separation. High purity helium was used as carried gas with a flow rate of 1.0 mL/min. The column temperature was set at 165 °C and held for 7 min for injection, then programmed at 5 °C/min to 185 °C and held for 5 min, then at 4 °C/min to 200 °C, and finally at 20 °C/min to 280 °C, and held for 2 min.
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3

Terpene Analysis of Foliar Samples

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Foliar terpenes were analysed as described in Padovan et al. [3 (link)]. Briefly, terpenes were separated using gas chromatography on an Agilent 6890 GC using an Alltech AT-35 (35% phenyl, 65% dimethylpolyoxylane) column (Alltech, DE, USA). The column was 60 m long and He was used as the carrier gas. One μl of the ethanol extract was injected at 250 °C at a 1:25 split ratio. The total elution time was 25 min. The components of the solvent extract were detected using an Agilent 5973 Mass Spectrometer. Peaks were identified by comparisons of mass spectra to reference spectra in the National Institute of Standards and Technology library (Agilent Technologies, IL, USA) and major peaks were verified by reference to authentic standards [13 (link)].
We identified 18 samples corresponding to three from each of the six chemotypes, to use with gene expression analysis, by comparison with the original samples in Keszei et al. [13 (link)].
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4

GC-MS Characterization of Essential Oil

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The essential oil was characterized and quantified by GC–MS analysis on an Agilent 6890N gas chromatograph instrument equipped with an Agilent 5973 mass spectrometer and an HP-5MS capillary column (length 30 m × 0.25 mm ID, film thickness 0.25 mm; Agilent-Technologies, Palo Alto, CA, USA). The carrier gas was helium at a constant flow of 1.0 mL/min. The oven temperature programs were as follows: from 50 °C (held for 2 min) to 80 °C (2 °C/min), from 80 °C to 150 °C (5 °C/min), from 150 °C to 200 °C (10 °C/min), from 200 °C to 300 °C (20 °C/ min) and held there for 5 min. The temperature of injector was 250 °C. The samples were diluted in hexane (1:40 v/v), then 1 μL of the diluted samples were injected in splitless mode. Component identification was done based on MS library search (NIST and Wiley). The percentage composition was calculated by integrating the peak areas of the chromatograms.
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5

FAME Analysis via GC-MS

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The analysis of FAME was done according to Ristivojević et al.55 (link). In short, an Agilent 6890 gas chromatograph equipped with a DB-23 capillary column (30 m × 0.25 mm id;film thickness of 0.25 μm) was used (Aglient Technologies Inc., Santa Clara, CA, USA). The capillary column was directly joined to an Agilent 5973 mass spectrometer (Agilent Technologies Inc.). The sample (1 μL) was injected into the capillary column with a split ratio of 10:1. Helium (purity of 5.0) was applied as the carrier gas with a flow rate of 0.6 mL/min. The temperatures of the detector and the injector were set to 230 °C and 250 °C, respectively.
The FAME were determined through comparing their retention times with those of the FAME standards (Supelco-37 FAME mix) under the same conditions, and through comparing their mass spectra with those stored in the Mass Spectral Library of the National Institute of Standards and Technology (NIST).
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6

GC-MS Analysis of Organic Compounds

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GC analyses were conducted with an Agilent 6890 GC (Agilent Technologies Inc., Santa Clara, CA, USA) with DB-23 capillary column (30 m × 0.25 mm ID, 0.25 μm film thickness) (Agilent Technologies Inc.). The capillary column was connected to an Agilent 5973 mass spectrometer (Agilent Technologies Inc.) with a quadruple analyzer and an electron energy of 70 eV. The analytical conditions were as follows. In the on-column inlet, the temperature was set to 50 °C, and the injection volume was 1 µL with a split ratio of 10:1. The column temperature was increased to 175 °C for 8 min and further increased to 235 °C at a gradient of 2 °C/min. Helium was used as the carrier gas at a flow rate of 0.7 mL/min. The temperatures of the detector and the injector were set to 230 °C and 250 °C, respectively. The mass spectra were recorded in the range of 30–800 m/z with a scanning frequency of 1.95 scans s−1.
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7

Headspace SPME Analysis of Volatile Organic Compounds

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Headspace solid-phase microextraction (HS-SPME) was performed using 5 mL of MF. To enhance the volatilization of the VOCs to the headspace (HS) and standardize sampling conditions, protonation of the acidic fraction of the MF was accomplished by saturating all the samples with NaCl and adjusting their pH to 3.2 using HCl [20 ]. Volatile organic compounds (VOCs) were extracted from the HS with a DVB/CAR/PDMS (divinylbenzene/Carboxen/polydimethylsiloxane, 1 cm length, 50/30 µm coating thickness) SPME fiber (Supelco, Bellefonte, PA, USA) at 60 °C for 90 min. Desorption was performed in the GC injector at 240 °C for 5 min. An HP 5890 series II Gas Chromatogram (GC) hyphenated to an Agilent 5973 Mass Spectrometer (MS, Agilent, Palo Alto, CA, USA) was used for GC–MS analysis. The GC injector was operated at 240 °C in splitless mode (2 min). The column used was a DB-FFAP (Agilent) of 30 m length × 0.25 mm i.d. × 0.25 µm film thickness with a constant carrier gas flow of helium at 1 mL/min. The GC oven program was as follows: 40 °C, hold for 2 min, ramped at 5 °C/min to 240 °C, and hold for 2 min. The MS was operated in full-scan mode (scanning from 50–350 amu at a rate of 4.6 scans/s) with ionization energy of 70 eV. The MS transferline, ion source, and quadrupole temperature were held at 240, 230, and 150 °C, respectively.
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8

Unsaponifiable Lipid Profiling by GC-MS

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This was determined according the method of Adewuyi et al. [12 (link)]. Briefly, oil was refluxed for 1 h in 25 mL of 2 M ethanolic potassium hydroxide. The reaction mixture was later diluted to 150 mL with distilled water and transferred into a separating funnel and the unsaponifiable matters were then extracted three times with 50 mL diethyl ether. The ether extract was first washed with 100 mL aqueous solution of 0.5 M potassium hydroxide in order to remove any residual fatty acids. This was further washed with distilled water until it was free of potassium hydroxide, dried over anhydrous sodium sulphate, and concentrated using a rotary evaporator. The unsaponifiables were identified by GC-MS using Agilent (Palo Alto, USA) 6890N gas chromatography equipped with an HP-1 MS capillary column connected to an Agilent 5973 mass spectrometer operating in the EI mode (70 ev; m/z 50–550; source temperature 230°C and quadruple temperature 150°C). Structural assignments were made based on interpretation of mass spectrometric fragmentation and confirmation by comparison of retention time as well as fragmentation pattern of authentic compounds and the spectral data obtained from the Wiley and NIST libraries.
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9

Identification of AHL Signals in C. freundii

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Sterile supernatants of the bacterium C. freundii B1 extracted in ethyl acetate and the synthetic standards of AHLs (C-4, C-6, C-8, C-10, C-12 and C-14) were loaded in a GC-system 6890 N interfaced to a singlequadrupole Agilent-5973 Mass-Spectrometer (Agilent Technologies). Only one µl of AHL standards and sample extract of marine associated bacterium C. freundii B1 was injected in splitless mode of GC-MS (Rekha et al., 2011) (link). Subsequently, AHL signal molecules produced by C. freundii B1 bacterial strain in culture extracts were identified by comparing mass-spectra and retention times against synthetic standards.
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10

Helium Screening by GC-MS Analysis

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An Agilent 6890N GC (Agilent Technologies, Palo Alto, CA) equipped with an Agilent Select Permanent Gases column was used [37] (link). This column consisted of two capillary columns set in parallel: a molecular sieve 5 Å PLOT capillary column (50 m x 0.53 mm) and a Porabond Q (10 m x 0.32 mm). Thanks to this design, He elutes on both columns during the same run, leading to a double peak detection, before O2 peak on molecular sieve 5 Å and before air peak on Porabond Q. The temperature program was as follows: 30°C, held for 3 min; the injector (splitless) set to 180°C and the interface MS temperature to 250°C. H2 was used as the carrier gas at a flow rate of 11 mL/min. The detection was performed with an Agilent 5973 mass spectrometer (Agilent Technologies, Palo Alto, CA), operating in the electron ionization mode (EI) at 70 eV. The selected ion monitoring (SIM) mode was used to acquire the He signal (m/z = 4) and the internal standard signal (CH4 m/z = 16 or N2O m/z = 44, according to laboratory availability and sample state). The analytical strategy is only based on He screening and does not require a full method validation.
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