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13 protocols using human il 2

1

Epitope Mapping of Ara h 2-Specific T Cells

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A maximum of 100 CD154+CD45RACD4+ T cells were sorted per well (U-bottom 96-well plate) after the CD154 expression assay and expended in the presence of 1.5 × 105 autologous irradiated PBMCs, 1 µg/mL PHA (Sigma), human IL-2 (10 U/mL, Roche), and T cell growth media. After 10–14 days, cells were transferred to a flat bottom 48-well plate and restimulated with irradiated PBMCs, 1 µg/mL PHA (Sigma), human IL-2 (10 U/mL, Roche), and T cell media. Cells were split and fed as appropriate. Once the cells were successful expanded, epitope mapping experiments were performed. For mapping, 105 expanded T cells were stimulated for 3 h at 37°C with 5 µg/mL of synthesized Ara h 2 peptide pools (Ara h 2 peptides were divided into four pools with five peptides per pool) in 96-well plate in the presence of 1 µg/mL anti-CD40 (HB14, Miltenyi Biotec) and 105 autologous PBMCs, in 10% human serum RPMI medium. After 3 h, cells were stained with PE-CD154 and APC-CD4 antibodies. Pool giving a positive response was retested with 40 µg/mL blocking antibodies anti-HLA-DR (L243) or anti-HLA-DQ (SPVL3) to examine DR or DQ restriction. Peptides from pool giving a positive response were then tested with individual peptides from the positive pool. Individual identified peptides (epitope) were loaded into the biotinylated HLA-DR or HLA-DQ proteins to generate tetramers for staining as described (22 (link)).
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2

Comprehensive Multicolor Flow Cytometry for Plasma Cell Analysis

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Abs used were CD19 PE (LT19; Miltenyi Biotec), CD138 allophycocyanin (B-B4; Miltenyi Biotec), CD38 PE-Cy7 (HB7; BD Biosciences), CD38 AF700 (HIT2; BioLegend), CD20 eFluor V450 (2H7; eBioscience); CD27 AF647 (LT27; AbD Serotec), CD27 FITC (M-T271), CD19 PerCP-Cy5.5 (SJ225C1; BD Biosciences), CD19 PE-Cy7 (SJ225C1; BD Biosciences), CD24 FITC (ML5; BD Biosciences), CD84 PE (CD84.1.21; BioLegend), CD38 PerCP-Cy5.5 (HIT2; BD Biosciences), CD95 BV421 (DX2; BioLegend), CD20 allophycocyanin-H7 (L27; BD Biosciences), CD27 BV605 (O323; BioLegend), CD3 VioGreen (BW264/56; Miltenyi Biotec), Ki67 FITC (B56; BD Biosciences), unconjugated goat anti-IRF4 (M-17; Santa Cruz Biotechnology), and donkey anti-goat IgG AF488 (polyclonal; Invitrogen). Controls were isotype-matched mouse mAbs. Annexin V FITC was from eBioscience, and 7-AAD was from BD Biosciences.
Reagents included human IL-2 (Roche), IL-6 (PeproTech), IFN-α (Sigma), IL-21 (PeproTech), goat anti-human F(ab′)2 fragments (anti-IgM and anti-IgG; Jackson ImmunoResearch), HybridoMax hybridoma growth supplement (Gentaur), Lipid Mixture 1, Chemically Defined (200×), and MEM Amino Acids Solution (50×, Sigma).
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3

B-cell Differentiation and Expansion

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Peripheral blood was obtained from healthy donors and the affected patient after informed consent. Mononuclear cells were obtained following lymphoprep density centrifugation. B cell selection was carried out with a Miltenyi memory B-cell isolation kit, selecting for untouched total B cells using the first step of the manufacturer’s protocol which depletes non-B cells. Alternatively, naïve B cells were enriched by depletion of memory cells using anti-CD27 MACs beads (Mitenyi). B-cells were cultured as previously described [30 (link), 31 (link)] in 24-well plates at 1×105 cells/ml in IMDM + 10% FBS with MEM amino acid solution (1:50) and Lipid Mixture 1, chemically defined (1:200) (all Thermo Fisher Scientific) and the addition of 20 U/ml human IL-2 (Roche), 50 ng/ml human IL-21 (Peprotech) and 10 μg/ml F(ab′)2 goat anti-human IgM/IgG (Jackson Immunoresearch) on previously irradiated CD40L-expressing fibroblasts. After 3 days, B cells were removed from the CD40L-cells by gentle pipette mixing. B cells were reseeded at in media containing 20 U/ml human IL-2 and 50 ng/ml human IL-21. On day 6, cells were seeded in media containing human IL-6 (10 ng/ml), human IL-21 (50 ng/ml), 100 U/ml multimeric APRIL (Adipogen), and 100nM gamma secretase inhibitor (GSI) inhibitor (L-685458; Sigma) and re-fed at day 10.
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4

In Vitro Cell Stimulation and Maintenance

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For the in vitro cell stimulation and maintenance, the following reagents were used: human IL-2 (Roche); IL-21 (PeproTech); goat antihuman F(ab′)2 fragments (anti-IgM & IgG) (Jackson ImmunoResearch); lipid mixture 1 chemically defined (200×) and MEM Amino Acids Solution (50×) (Sigma-Aldrich); for G9A inhibition, UNC0638 (Cayman Chemical); and for cell proliferation: CFSE (Sigma-Aldrich).
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5

In Vitro Culture of Human Lymphocytes

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Reagents utilized in the in vitro culture system include human IL-2 (Roche); IFN-γ (Sigma); IL-6, IFN-α and IL-21 (PeproTech); goat anti-human F(ab’)2 fragments (anti-IgM and -IgG; Jackson Immunoresearch); HybridoMax hybridoma growth supplement (Gentaur); Lipid Mixture 1, chemically defined (200X) and MEM Amino Acids Solution (50X; Sigma); and PF-429242 (Tocris Bioscience).
The antibodies employed for protein detection include CREB3L2 (NBP1-88697, Novus Biologicals), ATF6 (40256; Novus Biological), ACTIN (A1978; Sigma), LC3A/B (Cell Signaling). The reagents utilized in flow cytometry assays include PE-conjugated anti-CD19 (LT19; Miltenyi Biotech), V450-conjugated anti-CD20 (2H7; E-Biosciences), PE-Cy7-conjugated anti-CD38 (HB7; BD Biosciences); APC-conjugated anti-CD138 (B-B4; Miltenyi Biotech); CountBright beads (Invitrogen) and 7-AAD (BD Biosciences).
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6

Splenocyte Stimulation and Activation Assay

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Five hundred thousand splenocytes were cultured for 5 h in RPMI-1640 containing 10% FBS and 1000 IU/ml of human IL-2 (Roche) (media) in the presence of the following stimuli: 20 ng/ml recombinant mouse IL-12 (R&D Systems) plus 10 ng/ml IL-18 (MBL), 10 ng/ml PMA (Sigma) plus 1 μg/ml ionomycin (Sigma), or 10 μg/ml of plate-bound anti-mouse antibodies (BioLegend) against NK1.1 (PK136), Ly49H (3D10), Ly49D (4E5), or NKp46 (29A1.4) coated on 96-well high bind plates (Corning). Brefeldin A (BioLegend) and BD Golgi Stop were added to the media 1 h into the stimulation, and anti-mouse CD107a antibody was added 2 h into the stimulation. Cells were cultured in media alone as a negative control.
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7

Isolation and Expansion of SIV-Reactive Memory B Cells

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Cryopreserved PBMCs were thawed, washed, and stained with an antibody cocktail (1:100 dilution) of CD3 (clone SP34-2, BD Biosciences), CD4 (clone OKT4, Biolegend), CD8 (clone RPA-T8, BD Biosciences), CD14 (clone M5E2, BD Biosciences), CD20 (clone 2H7, Biolegend), IgM (MHM-88, Biolegend), IgG (clone G18-145, BD Biosciences) and fluorescently labeled biotinylated SIVmac239 SOSIP.664 Env at room temperature for 20 min in the dark. SIVmac239 Env trimer probes were labeled with two different fluorophores, from which SIVmac239 Env dual positive memory B cells (CD3CD4CD8CD14CD20+IgMIgG+SIVmac239 SOSIP2+) were analyzed with BD FACSMelody or BD FACSFusion, and single-cell sorted, cultured, expanded in 384-well plates as described previously28 (link),29 (link). Briefly, sorted B cells were cultured with Iscove’s modified Dulbecco’s medium (IMDM) with GlutaMAX (Gibco) supplemented with 10% heat-inactivated fetal bovine serum (FBS), 1× MycoZap Plus-PR (Lonza), 100 U/mL human IL-2 (Roche), 50 ng/mL human IL-21 (Invitrogen), 50 ng/mL human IL-4 (Miltenyi), 0.1 μg/mL anti-rhesus IgG (H + L) (BioRad), and irradiated 3T3msCD40L feeder cells. Flow cytometric data were subsequently analyzed using FlowJo (v10.7.1).
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8

Establishing Luciferase-expressing Cell Lines

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Luciferase-expressing MC38 (colon cancer), LL/2 (Lewis lung carcinoma), and TRAMP-C2 (prostate cancer) mouse cell lines [American Type Culture Collection (ATCC)] were established by transducing them with RediFect Red-FLuc lentiviral particles (PerkinElmer). Their high luciferase expression was confirmed through 10 passages. IL-2–dependent CD25-expressing mouse T lymphocyte HT-2 clone A5E cells (HT-2-A5E) were purchased from ATCC. Cells were cultured in RPMI 1640 medium (Thermo Fisher Scientific Inc.) supplemented with 10% fetal bovine serum and penicillin (100 IU/ml)–streptomycin (100 μg/ml) (Thermo Fisher Scientific Inc.). For HT-2-A5E culture, 0.05 mM 2-mercaptoethanol and 0.1 nM human IL-2 (Roche) were also added.
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9

Characterization of Anti-HIV Compounds

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Nelfinavir was obtained through the AIDS Research and Reference Reagent Program, Division of AIDS, NIAID, NIH; raltegravir from Merck & Company, Inc.; human IL-2 from Dr. Maurice Gately, Hoffmann-La Roche Inc. [76 (link)]; HIV-1NL4-3 from Dr. Malcolm Martin [77 (link)]. pifithrin-α, p-Nitro, Cyclic [78 (link),79 (link)], a more potent analogue of pifithrin-α with a longer half-life, was obtained from Santa Cruz Biotechnology.
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10

Expansion of NY-ESO-1 TCR Engineered T Cells

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T cells were isolated from cryopreserved PBMCs from three healthy HLA-A*02 donors using T cell enrichment kit (StemCell, Vancouver, Canada) following manufacturer’ instructions and stimulated using Dynabeads (Gibco, Waltham, MA). After 24 h, NY-ESO-1 lentivirus (A12 Lentivirus, Lentigen, Gaithersburg, MD) was added to T cells at a multiplicity of infection (MOI) of 10 in presence of Lentiboost A and Lentiboost B (Sirion Biotech, Cambridge, MA). After transduction, T cells added to the GRex system (WilsonWolf, Saint Paul, MN) in hTCM media for expansion and were harvested at day 11 after confirming the NYESO-1 TCR expression on CD3+ cells by flow cytometry using a NY-ESO-1 tetramer (MBL International, Waltham, MA). hTCM media was prepared by adding human IL-2, 50 Iµ/ml (Roche, Basel, Switzerland) and human IL-7, 2.5 ng/ml (Biolegend, San Diego, CA) to media containing RPMI 1640 Medium (Mod.) 1X with L-Glutamine (Corning, NY), 10% FBS (Gemini, Sacramento, CA), HEPES 10 Mm (Gibco), Penicillin-Streptomycin 50 µ/ml (Gemini, Sacramento, CA), MEM Non-Essential Amino Acids Solution 1X, MEM Amino Acids Solution 1X, B2-mercaptoethanol 50 Mm (Gibco).
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