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61 protocols using saccharomyces cerevisiae

1

H2O2 Production in Immune Cells

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After the 2 h incubation at 37 °C, H2O2 production by PBMCs and neutrophils was measured using 2,7-dichlorofluorescin-diacetate (DCFH-DA) as an indicator [41 (link),42 (link)]. A stock solution of DCFH-DA (2.05 mM) in ethanol was prepared and stored at −20 °C until analysis. Hanks’ Balanced Salts Medium was prepared in a relation of 9.8 g/L water. H2O2 production in PBMCs and neutrophils was measured before and after stimulation with lipopolysaccharide (LPS) (100 µg/mL PBS) from Escherichia coli (Sigma-Aldrich, St. Louis, MO, USA) or Zymosan A (ZYM) (1 mg/mL PBS) from Saccharomyces cerevisiae (Sigma-Aldrich). A total of 50 µL of LPS or ZYM prepared in PBS was added to the wells. DCFH-DA in ethanol was diluted in Hanks’ Balanced Salts Medium (relation 30 µL DCFH-DA/mL Hanks’) and added to a 96-well microplate containing 50 µL of cell suspension (containing about 6 × 105 cells). The fluorescence (Ex, 480 nm; Em, 530 nm) was recorded at 37 °C for 60 min in FLx800 Microplate Fluorescence Reader (Bio-tek Instruments, Inc.) by punctual ultraviolet light exposures and emission readings were recorded every minute (60 total readings). H2O2 concentration was calculated by measuring fluorescence of a standard curve of known H2O2 concentration after its reaction with DCFH-DA, in the same conditions as the samples.
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2

Coupled Enzyme Assay for APSK and ATPS

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The activity of both enzymes was determined by the production of ADP which was coupled to NADH oxidation via pyruvate kinase and lactate dehydrogenase58 (link). The assays were performed in a final volume of 100 µl 96-well deep-well plates and spectrophotometrically monitored (Omega multimode microplate reader) at 360 nm at 35 °C. KH2PO4 (100 mM) at pH 7.0, supplemented with 1.5 mM MgCl2 and 100 mM KCl, was used as a buffer. For NADH, a molar extinction coefficient of 4,546.7 cm−1 M−1 was experimentally determined for the above-named conditions. To the buffer, 1 mM NADH, 2.5 mM Na2SO4, 1 mM phosphoenolpyruvate (PEP), 2 mM ATP, 2 U inorganic pyrophosphatase (Saccharomyces cerevisiae, 10108987001, Sigma-Aldrich), 1.1 U ml−1 lactate dehydrogenase, 0.8 U ml−1 pyruvate kinase (rabbit muscle, P0294, Sigma-Aldrich) and 0.5 mg ml−1MtAPSK (all final concentrations) were added. The reaction was started by the addition of 0.5 mg ml−1MtATPS. Addition of 0.02 mM Na2MoO4 did not affect activity (0.116 ± 0.027 µmol of oxidized NADH min−1 mg−1), but the addition of 2 mM Na2MoO4 resulted in a decrease (0.068 ± 0.019 µmol of oxidized NADH min−1 mg−1). All assays were performed in triplicates.
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3

Spectroscopic α-Glucosidase Inhibition Assay

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α-Glucosidase inhibitions were determined following a modified spectroscopic method [87 (link)]. A solution of α-glucosidase (obtained from Saccharomyces cerevisiae (Sigma-Aldrich, Munich, Germany)) was prepared in phosphate buffer (pH 6.8, 100 mM). Wells of the 96-well microliter plates were filled with test sample solutions (12.5 μL) prepared in DMSO. After this, enzyme (0.5 U/mL, 40 μL) and then phosphate buffer (100 mM, 120 μL) were also mixed with the test sample solutions. Incubation at 37 °C for 5 min and then addition of 40 μL of the substrate, p-nitrophenyl-α-D-glucopyranoside (PNPG) (5 nM, Sigma-Aldrich, Munich, Germany), was performed. Mixtures were again incubated for 30 min, and absorbance was measured at 405 nm and 37 °C for the released 4-nitrophenol in each mixture. Acarbose (Sigma-Aldrich, Munich, Germany) and DMSO worked as standard and negative inhibitors, respectively. Each experiment was carried out thrice, and percentage inhibitions were determined with the help of following expression, followed by the determination of IC50 values.

where A is absorbance.
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4

Zymosan-Induced Inflammation Protocol

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WT mice were injected with zymosan A (from Saccharomyces cerevisiae, Sigma-Aldrich) at 100mg/kg, i.p. since the lower dose of zymosan have no significant effect on rectal temperature 4 . In the experiments the mice received saline or RSL3 (40mg/kg) or IKE (imidazole ketone erastin, (50mg/kg) with /without DETA NONOate (120mg/kg), i.p. injection at 72 h after zymosan administration, and the peritoneal exudates were collected 5 at 5 h after the RSL3 and/or DETA NONOate administration.
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5

Mannose-Dependent Phagocytic Uptake of Zymosan

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Mannose-dependent phagocytic uptake of zymosan A particles from Saccharomyces cerevisiae (β-glucan of yeast cell wall; Sigma) by mature macrophages was measured as previously (23 (link)). Mature macrophages were treated with 10% HI-FBS in IMDM (control), or 10 µg/mL TYL, for 2 h, a concentration at which tylvalosin significantly increased apoptosis and efferocytosis. Treated macrophages were exposed to zymosan (10 mg/mL) for 2 h. Cells were stained with Diff-Quik, and zymosan particles engulfed inside macrophages were enumerated. Macrophages containing one or more ZYM particles were counted as “positive cells” and values were calculated as a ratio of positive macrophages versus total macrophages.
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6

α-Glucosidase Inhibition Assay for Anti-Diabetic Potential

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The anti-diabetic potential of extracts was further determined by α-glucosidase inhibition bioassay using a previously reported protocol with minute modifications [42 (link), 43 (link)]. In the experiment, 50 mL of phosphate buffer (pH 6.8) supplemented with 100-mg BSA (bovine serum albumin) was used to dissolve α-glucosidase (Saccharomyces cerevisiae, Sigma-Aldrich). Reaction mixtures constituting 10 μL of tested sample, phosphate buffer (490 μL; pH 6.8) and p-nitrophenyl α-D-glucopyranoside (5 mM; 250 μL) were kept sepatately for incubation at 37 °C for 5 min. Two hundred fifty microlitre α-glucosidase (0.15 unit/mL) was then added to each mixture followed by incubation for 15 min at 37 °C. After terminating reaction, by adding 2 mL Na2CO3 (200 mM) solution, absorption was recorded using a UV-Vis spectrophotometer at 400 nm. The assay is based on the quantification of p-nitrophenol release from p-nitrophenyl α-D-glucopyranoside. In the experiment, acarbose was employed as a positive control and assay was repeated three times.
%Enzyme inhibition=AbsSampleAbsnegative controlAbsblankAbsnegative control×100
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7

Zymosan-Induced Colitis in Mice: A Model for Inflammation

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Colitis was induced in animals by the administration of zymosan, as described previously [41 (link),47 (link),48 (link)]. Mice were anesthetized by isoflurane inhalation (1-3%, or as needed). During surgery, body temperature was maintained at 37°C using a heating pad. A lubricant ointment (artificial tears) was applied to the eyes. A volume of 0.1 ml zymosan suspension (30 mg/ml in saline; derived from Saccharomyces cerevisiae; Sigma, St. Louis, MO) was administered transanally via a 22-gauge, 24-mm-long stainless-steel feeding needle into the colons of mice over a period of 2 min. A control group of mice was subjected to a similar procedure except that 0.1 ml saline was administered transanally. Zymosan or saline were given daily for three consecutive days.
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8

Vibrio fimbria activity analysis

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The effects of CNMA and its derivatives on the V. parahaemolyticus fimbria activity were investigated using Saccharomyces cerevisiae (Sigma-Aldrich, St. Louis, MO, USA), as reported previously [43 (link)]. Briefly, approximately 0.4 mL of the adjusted V. parahaemolyticus cells (OD 0.5) was added to 14 mL tubes containing 1.5 mL of PBS and 0.5 mL S. cerevisiae (2% w/v in PBS). The initial OD600 of the mixture was achieved by gentle vortexing for 5 s and measured using a spectrophotometer. After incubation for 10 min at room temperature, 100 µL of the upper phase was transferred to a 96-well plate, and the final OD600 was measured. The presence of visible aggregates of agglutinated cells affected the OD600 measurement. Therefore, vigorous vortexing for 30 s disturbed the agglutinated cells before taking the final OD600 values. The agglutination was expressed in percentage using the equation: 100×(1OD600 before vortexingOD600 after vortexing) .
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9

Vibrio diazotrophicus culture and zymosan preparation

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Vibrio diazotrophicus (American Type Culture Collection; item #33466) (47 (link)) was grown in marine broth (Difco Laboratories) as described (43 (link), 48 (link), 49 (link)). Vibrio cells were re-suspended in artificial CF (aCF; 10 mM CaCl2, 14 mM KCL, 50 mM MgCl2, 390 mM NaCl, 1.7 mM Na2HCO3, 25 mM Na2SO4 (45 (link)), adjusted to 104 and 106 bacteria/µL in 1 mL aliquots, heat-killed and stored at -20°C.
Zymosan A particles (1 mg) from Saccharomyces cerevisiae (Sigma-Aldrich: Product number Z4250 CAS#58856-93-2) were rehydrated in 100 μL of aCF, heated to 100°C in a water bath for 1 hour and centrifuged at 1700 x g for 30 minutes according to the supplier’s protocol. The pellet was resuspended in aCF at a final concentration of 2 x 105 particles/μL and stored at -20°C.
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10

Saccharomyces-derived β-glucan Solubilization

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β− 1,3 -glucan derived from Saccharomyces cerevisiae (Sigma Aldrich Chemical Co., catalogue number G5011-25MG) (molecular weight 5.85 kDa) was dissolved by vigorous vortexing and sonication in PBS at 1 mg/ ml.
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