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12 protocols using microbeta plate counter

1

Quantifying MDSC-Mediated T Cell Suppression

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MDSC-mediated suppression was assessed using previously established methodology7 (link). Briefly, splenic MDSCs were isolated from the spleens of mice bearing B16-F10 melanoma or MC17-51 fibrosarcoma, by using the EasySep Mouse (CD11b+GR1+) isolation kit (Stemcell Technologies, 19867), or the MDSC isolation kit (Miltenyi Biotech, 130-094-538) to separate GR1hiLy6G+Ly6C (PMN-MDSC) and GR1dimLy6GLy6C+ (M-MDSC) cells. Serial dilutions of MDSCs (2 × 105, 1 × 105, 0.5 × 105, 0.25 × 105 and 0.125 × 105) were plated in flat bottom 96-well plates with 2 × 105 splenocytes per well isolated from OTI-TCR transgenic mice and 250 ng ml-1 of ovalbumin peptide (OVA257-264) for 72 h. As a control, OTI splenocytes were incubated with OVA peptide (OVA257–264) without MDSC. 3H-thymidine was added for the last 16 h of a 72 h culture, and thymidine incorporation was measured by MicroBeta plate counter (Perkin Elmer).
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2

Tango Assay for β-Arrestin Recruitment to D2L and D3 Receptors

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Recruitment of β-arrestin to agonist-stimulated D2L or D3 receptors was performed using Tango.41 (link),56 (link) Briefly, HTLA cells stably expressing β-arrestin-TEV protease and a tetracycline transactivator-driven luciferase were plated in 15 cm dishes in DMEM containing 10% FBS and transfected (via calcium phosphate) with 10 μg of a D2V2-TCS-tTA or D3V2-TCS-tTA construct. The next day, cells were plated in white, clear-bottom, 384-well plates (Greiner; 15 000 cells/well, 40 μL/well) in DMEM containing 1% dialyzed FBS. The following day, media were decanted and exchanged for fresh DMEM media containing 1% dialyzed FBS. Importantly, the same drug dilutions used for the Gi/o-mediated cAMP inhibition assay were used for the Tango assay to prevent compound solubility variability between assays. Cells were treated with 10 μL/well of drug using a FLIPR and for D2R antagonist assays, antagonists were diluted in 10 nM dopamine. After at least 20–22 h, the medium were removed and replaced with 1:20 diluted BrightGlo reagent (Promega), and luminescence per well was read using a MicroBeta plate counter (PerkinElmer). Data were normalized to vehicle (0%) and quinpirole or dopamine-stimulated controls (100%) and analyzed using the sigmoidal dose–response function built into GraphPad Prism 5.0.
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3

Allogeneic cMuStem Cell Co-culture Assay

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cMuStem cells (n = 7 independent cell batches) were thawed and seeded at 1 × 104 cells/cm2 for 1 week. Next, host PBMCs harvested before and after cell delivery were thawed in cMuStem cell growth medium and cultured overnight at 37°C and 5% CO2. cMuStem cells were harvested and, together with splenocytes taken from another dog and used as a positive control, were irradiated at 35 Gy. PBMCs were then cultured in quadruplicate at 1 × 105 cells per well in 96-well plates with irradiated cMuStem cells. In parallel, PBMCs were also cultured with control splenocytes or stimulated with 10 μg/mL Concanavalin A (ConA; Sigma-Aldrich) to serve as a positive control of proliferation. cMuStem cells were diluted at 2:1, 1:1, 1:4, 1:16 and 1:64 (MuStem cells: PBMCs) to demonstrate a dose effect. After 5 days of co-culture, cells were incubated overnight with tritiated thymidine (1:40; NET027A001MC, Perkin Elmer, Waltham, MA, USA) at 37°C and 5% CO2. Cells were harvested on a filter using a Perkin Elmer Harvester and radioactivity was measured as counts per minute (cpm) using a MicroBeta plate counter (Perkin Elmer).
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4

T Cell Proliferation Assay with Myeloid-Derived Suppressor Cells

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T cells were purified from mouse spleen using MACS with a pan T-cell isolation kit (Miltenyi Biotec). A total of 2 × 105 normal splenic T cells were stimulated with 1 μg/ml of anti-CD3 (eBioscience, Waltham, MA) and 10 μg/ml of anti-CD28 (BD Bioscience) antibodies in RPMI 1640 medium containing 10% heat-inactivated FBS and 2 mM glutamine. FACS-sorted CD11b+Gr1hi cells from the LPS + PBS group or the LPS + TDCA group were mixed with T cells at a final concentration of 4 × 104/well (E:T = 1:5) in a 96-well flat-bottom plate (Nunc, Roskilde, Denmark) and cultured for 96 h at 37°C in a humidified 5% CO2 atmosphere. T cells cultured without CD11b+Gr1hi cells served as a negative control. The cells were pulsed with 1 μCi [3H] methyl-thymidine (Perkin Elmer, Waltham, MA) for 18 h. The cells were harvested with a Filtermate Harvester (Perkin Elmer), and the isotope incorporation was measured using a MicroBeta Plate Counter (Perkin Elmer). The data are expressed as the counts per minute (cpm) ± standard error of the mean (SEM).
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5

Quantifying Male Gametocyte Exflagellation

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To determine whether ΔPbnpt1 parasites were deficient in formation of male gametes (as reported previously14 (link)), microgametogenesis was induced in WT and ΔPbnpt1 parasites by a drop in temperature and the addition of xanthurenic acid. The extent of [3H]hypoxanthine incorporation into DNA that is newly synthesized upon exflagellation of the microgametocytes was measured as described previously54 (link). Briefly, wild type and ΔPbnpt1 parasite cultures were magnet purified using a VarioMACS separation unit and resuspended in hypoxanthine-free RPMI-HEPES (RPMI supplemented with 20 mM HEPES and 4 mM sodium bicarbonate, pH 8.0). Aliquots of purified parasites were transferred into wells of a 96-well plate to a final volume of 200 μl. 25 μl of gametocyte activating media (RPMI-HEPES supplemented with 100 μM xanthurenic acid and 16 μCi ml−1 [3H]hypoxanthine) was added to each well. The plate was incubated for 10 min at room temperature, during which time competent male gametocytes will undergo three rounds of genome replication followed by exflagellation, then frozen at −20 °C. The plate was thawed to lyse the cells, and radiolabelled DNA transferred to filters using a Filtermate Universal Cell Harvester (Perkin Elmer). The samples were read using a MicroBeta plate counter (Perkin Elmer). This provides a quantitative measure for microgametogenesis.
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6

Radioligand Binding Assay with WGA SPA Beads

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5 μg/well membrane together with 200 μg/well of PVT WGA SPA beads (GE #RPNG-0001) were suspended in a white 96 well plate with a final concentration of 50 μl/well in assay buffer (50 mM Tris, 10 mM MgCl2 & 2 mM EDTA). The plate was shaken aggressively for 30 min before adding 20 μl/well of compound in 0.1% BSA assay buffer and 30 μl/well of radio-ligand in 0.5% assay buffer yielding a final concentration of 15,000 cpm/well. The plate is briefly mixed and incubated for 3–18 h at room temperature, before it is read on a MicroBeta plate counter (Perkin Elmer, MS, USA).
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7

NK Cell Cytotoxicity Assay

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NK Target cells were grown over night in the presence of 35S added to a Methionine-free media (Sigma). Prior to incubation with the effectors, target cells were washed, counted, and 5000 cells/well were plated. For each target, the spontaneous 35S release was calculated from cells which were not incubated with effector cells, and maximum 35S release was calculated by adding 0.1M of NaOH to the target cells. The level of 35S release was measured after 5 hours of incubation with effectors by a MicroBeta Plate Counter (Perkin Elmer).
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8

MDSC-Mediated T Cell Suppression Assay

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MDSC-mediated suppression was assessed using previously established methodology (19 (link)). Briefly, splenic MDSCs were isolated from the spleens of tumor-bearing EGFR-WT and EGFRvIII-mutant GBM mice using the EasySep Mouse MDSC (CD11b+GR1+) Isolation Kit (StemCell Technologies, #19867). MDSC–splenocyte co-cultures were incubated in DMEM containing 5% FCS (R&D systems, S11150), 2 mM glutamine (Corning, #25–005-Cl), 100 units/mL penicillin-streptomycin (Gibco, #15–140-122), 10 mM Hepes (Corning, #25–060-Cl) and 20 μM beta mercaptoethanol (Gibco, #31350010). Serial dilutions of MDSCs (2×105, 1×105, 1×104) were plated in RPMI 1640 (Corning, #15–040-CM) in flat bottom 96-well plates with 2×105 splenocytes per well isolated from OTI-TCR transgenic mice (The Jackson Lab, C57BL/6-Tg(TcraTcrb)1100Mjb/J, stock No: 003831) and 0.1 nM of ovalbumin peptide (OVA257–264) (Sigma, #S7951–1MG) with 10 ng/mL of IL2 (Peprotech, #212–12) for 72 hours. As control, OTI splenocytes were incubated with OVA peptide (OVA257–264) and IL2 without MDSC. 3H-thymidine (Perkin Elmer, 1 mCI, cat # NET027W001MC1) was added for the last 16 hours of a 72 hr culture, and thymidine incorporation was measured by MicroBeta plate counter (Perkin Elmer).
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9

Radioligand Binding Assay for 5HT1A Receptor

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Human embryonic kidney cells expressing
the human 5HT1A receptor (HEK-h5HT1A) were used.
The methods for cell membrane preparation and [3H]8-OH-DPAT
binding assays have been described previously.21 (link) In brief, the assay was performed as follows: 96-well assay
tubes containing (in duplicate) serial dilutions of drugs were made
using a Biomek 4000 robotics system. The reaction mixture contains
drug, cell homogenate (0.05 mg protein/well), [3H]8-OH-DPAT
(0.5 nM final concentration, 170 Ci/mmol, Perkin Elmer), and assay
buffer (25 mM Tris HCl, pH 7.4, containing 100 μM ascorbic acid
and 10 μM pargyline). Non-specific binding was determined with
1.0 μM dihydroergotamine. The plates were incubated at room
temperature for 60 min and then filtered on a Tomtec cell harvester.
The filters were washed with cold 50 mM Tris buffer (pH 7.4), dried,
spotted with scintillation cocktail, and counted for 2 min on a Perkin
Elmer microbetaplate counter. IC50 values were calculated
with GraphPad Prism, and IC50 values were converted to
Ki values using the Cheng–Prusoff correction.
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10

SERT Membrane Binding Assay with [125I]β-CIT

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Binding of the high-affinity cocaine analog [125I]β-CIT was measured in crude membrane preparations from SERT-transfected HeLa cells as described previously 95 (link). For membrane binding assays, frozen membranes from cells expressing SERT mutants were thawed on ice, applied to Multiscreen-FB 96-well filtration plates (Millipore, approximately 100 µg per well), and washed five times by filtration with 100 μl of binding buffer (10 mM HEPES buffer, pH 7.4, containing 150 mM NaCl, Na-isethionate, or NMDG-Cl as indicated). β-CIT binding was then initiated by the addition of 100 µl of binding buffer containing 0.1 nM [125I]β-CIT and the indicated concentration of individual test compounds. Binding was allowed to proceed for 1.5 h at 20°C with gentle rocking. The reaction was stopped by filtration and three washes with 100 μl of ice-cold PBS buffer. 50 μl of Optifluor was added to each filter and the plates were counted with a PerkinElmer Microbeta plate counter.
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