The largest database of trusted experimental protocols

7 protocols using anti histone h3

1

Exosomal Protein Profiling by Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
The exosomal fraction was lysed with 1× radioimmuno precipitation assay (RIPA; CMG, Iran) containing protease inhibitor (SIGMAFAST ™, USA) on ice. The protein concentration was determined using the Bradford method. Lysed exosomes were separated by electrophoresis in a 12% acrylamide sodium dodecyl sulfate (SDS) gel and then were transferred to NC membrane (BioRad, Hercules, and CA). The exosomal marker was visualized using primary antibodies (anti-CD63 antibody [rabbit IgG, System Biosciences, California] and anti-Histone H3 as a negative control [rabbit polyclonal, Bio-Legend, San Diego, CA]) and secondary antibody (goat antirabbit HRP IgG, System Biosciences, California). The blots stained with DAB as the chromogenic substrate in colorimetric detection.
+ Open protocol
+ Expand
2

B Cell Stimulation and Epigenetic Regulation

Check if the same lab product or an alternative is used in the 5 most similar protocols
B cells from C57BL/6 mice were stimulated with LPS (3 μg ml−1) plus IL-4 (4 ng ml−1) in the presence of nil, butyrate (500 μM), propionate (2000 μM), or butyrate (500 μM) plus propionate (2000 μM) for 72 h. Cells were harvested and lysed in Laemmli buffer. Cell extracts containing equal amounts of protein (20 μg) were fractionated through SDS-PAGE (10%). The fractionated proteins were transferred onto polyvinylidene difluoride membranes (Bio-Rad Laboratories) overnight (30 V) at 4 °C. After blocking and overnight incubation at 4 °C with anti-AID (ZA001, Invitrogen), anti-Blimp1 (6D3, eBioscience), anti-acetyl-histone H3 (H3K9ac/K14ac, 17–615, Millipore), anti-histone H3 (601901, BioLegend), or anti-β-Actin mAb (AC-15, Sigma-Aldrich), the membranes were incubated with HRP-conjugated secondary Abs. After washing with PBS-Tween 20, bound HRP-conjugated Abs were detected using Western Lightning® Plus-Enhanced Chemiluminescence reagents (PerkinElmer Life and Analytical Sciences).
+ Open protocol
+ Expand
3

Western Blot for Nuclear and Cytoplasmic Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were lysed in RIPA buffer, and whole-cell extracts were quantified by the Bradford assay (Bio-Rad). For assessment of nuclear proteins, nuclear extracts were obtained using NE-PER nuclear and cytoplasmic extraction kit (Thermo Scientific). The protein samples or cell lysates were analyzed by SDS-PAGE and Western blot. Briefly, after proteins were transferred onto PVDF membranes (Millipore), the membranes were incubated with indicated primary antibodies, followed by a HRP-conjugated secondary antibody. Immunoreactive bands were detected using the Western Lighting Plus-ECL system (PerkinElmer) or the SuperSignal West Dura Extended Duration Substrate (Pierce). The primary antibodies used for Western blot included anti-p38 (2F11, Millipore), anti-phospho p38 (Thr180/Tyr182) (2BB10, Cell Signaling), and anti-β-actin (C4, Millipore), anti-NKG2A (Abnova), anti-GATA-3 (D13C9, Cell Signaling), anti-phospho-GATA-3 (Ser308) (EPR18118, Abcam), and anti-Histone H3 (BioLegend).
+ Open protocol
+ Expand
4

Protein Profile Analysis of Nanoparticles

Check if the same lab product or an alternative is used in the 5 most similar protocols
The protein profiles of M, MP, and MP@H-MnO2-Dox-Col NP were evaluated via sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and coomassie brilliant blue staining (Beyotime, Shanghai, China). Western blotting was conducted to identify specific protein markers in RAW264.7 cells. After transferring the proteins onto polyvinylidene difluoride membranes, these were incubated at 4℃ overnight with anti-histone H3 (BioLegend, San Diego, CA, USA), anti-pan-cadherin (Santa Cruz Biotechnology, Dallas, TX, USA), and integrin α4 antibodies (Proteintech, Chicago, USA) and Na+-K+-ATPase (Abcam, Cambridge, UK), which was used as a reference protein.
+ Open protocol
+ Expand
5

Cytoplasmic and Nuclear Protein Extraction

Check if the same lab product or an alternative is used in the 5 most similar protocols
Extracts were prepared using a Cytoplasmic and Nuclear Extraction kit (Nordic BioSite) following the manufacturer's instructions. Briefly, cells were washed with ice cold PBS and the pellet was resuspended into the volume equal to seven times of cytoplasmic extraction reagent. After 30 min incubation on ice, the lysate was centrifuged at 16000 x g for 10 min at 4°C. Supernatant (cytoplasmic fraction) was carefully removed and the pellet was resuspended into the volume equal to two times of the nuclear extraction buffer. Lysates were placed on ice for 30 min with occasional vortexing followed by centrifugation at 16000 x g for 10 min at 4°C. Supernatant (nuclear fraction) was collected. Immunoblotting was performed using anti-phospho ERK1/2, anti-ERK1/2, anti-Histone H3 (Biolegend) and anti-α-Tubulin (B-5-1-2, Sigma) antibodies.
+ Open protocol
+ Expand
6

Western Blot Analysis of FLASH

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were suspended in ice-cold Lysis buffer (50 mM Tris-HCl, pH 7.5 with 150 mM NaCl, 5 mM EDTA, 1% NP-40, and 0.5% sodium deoxycholate) containing a protease inhibitor cocktail (Nacalai Tesque). Cell lysates were resolved by SDS-PAGE and analyzed by Western blotting as described previously [6] (link). The antibodies used were an anti-FLASH monoclonal antibody (1∶1000; generated in our laboratory [6] (link)), anti-FLASH polyclonal antibody (1∶1000; M-300; Santa Cruz), anti-actin (1∶5000; C4; Chemicon), anti-histone H3 (1∶1000; BioLegend), and anti-estrogen receptor (1∶100; HC-20; Santa Cruz). The secondary antibodies used were Alexa Fluor 488-conjugated anti-mouse or rabbit IgG (1∶5000; Invitrogen).
+ Open protocol
+ Expand
7

Quantifying Histone H3 Acetylation in HCC827 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
One day after HCC827 cell seeding at 2.5 × 105 cells/well on a 6-well culture plate, the medium was replaced with medium containing 0–1000 nM Ent. After 4 days, the cells were washed twice with ice-cold phosphate-buffered saline (PBS), collected by trypsinization, washed twice with ice-cold PBS, and lysed with RIPA Buffer (Wako, Osaka, Japan) containing cOmplete Mini, EDTA-free (Roche, Basel, Switzerland) for 30 min on ice. The lysate was centrifuged at 15,000g for 30 min at 4°C and the supernatant was collected. Subsequent processing was carried out as described elsewhere [12 (link)]. Briefly, a 30 μg aliquot of protein was separated on 4–20% polyacrylamide gel and transferred onto a polyvinylidene difluoride membrane. The membrane was blocked with 5% skim milk and blotted with primary antibodies [anti-histone H3 (BioLegend, San Diego, CA) or anti-acetyl-histone H3 (Lys9) (Cell Signaling Technology, Danvers, MA)] overnight at 4°C. The next day, the membrane was washed and reacted with goat anti-rabbit IgG-HRP (Santa Cruz Biotechnology, Santa Cruz, CA) for 1 hr at room temperature. The band intensity was measured using ECL substrate (GE Healthcare, Little Chalfont, Buckinghamshire).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!