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Brainsight system

Manufactured by Rogue Research
Sourced in Canada

The Brainsight system is a lab equipment product that utilizes advanced imaging technology to provide precise tracking and visualization of brain activity. It enables researchers to accurately monitor and analyze neurological processes. The core function of the Brainsight system is to facilitate high-quality data collection and analysis for neuroscientific research purposes.

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15 protocols using brainsight system

1

Functional Neuroimaging and Electrode Placement

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Two Cilux recording chambers (Crist Instruments) were placed over cOFC and PCC45 ,85 (link)–87 (link); Fig. 1D). Note that this posterior region is overlapping with but ventral to a region we have previously recorded in known as CGp34 (link),88 (link),89 (link). Position was verified by magnetic resonance imaging with the aid of a Brainsight system (Rogue Research Inc.) for subject P and Cicerone system (Dr. Matthew D. Johnson at University of Minnesota) for subject S. Neuroimaging was performed at the Rochester Center for Brain Imaging, on a Siemens 3 T MAGNETOM Trio Tim using 0.5 mm voxels. We confirmed recording locations by listening for characteristic sounds of white and gray matter during recording, which in all cases matched the loci indicated by the Brainsight system or Cicerone system.
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2

Nonhuman Primate Neurosurgical Access

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Two adult male macaque monkeys were used in this study. In both animals, access to area IT was made possible by the use of a custom ball-and-socket chamber (Schiller and Koerner 1971 (link); Sheinberg and Logothetis 1997 (link)) placed over either the right hemisphere (monkey Y) or the left hemisphere (monkey H) at +17 mm anterior, +20 mm lateral (Horsley-Clark stereotactic coordinates). Chamber location was verified using computed tomography (CT) scans for both animals, and the data were processed using a CT-magnetic resonance imaging (MRI) merge in NIH-AFNI software or the Brainsight system (Rogue Research) (see Fig. 1A). All surgeries were performed under isoflurane anesthesia, in accordance with the guidelines published in the National Institutes of Health Guide for the Care and Use of Laboratory Animals and approved by the Brown University Institutional Animal Care and Use Committee.
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3

Precise Localization of OFC Area 13

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A Cilux recording chamber (Crist Instruments) was placed over the area 13 (ref. 55 (link)) of OFC (Fig. 1b and Supplementary Fig. 1). The targeted area expands along the coronal planes situated between 28.65 and 33.60 mm rostral to the interaural plane with varying depth. Position was verified by magnetic resonance imaging with the aid of a Brainsight system (Rogue Research Inc.). Neuroimaging was performed at the Rochester Center for Brain Imaging, on a Siemens 3T MAGNETOM Trio Tim using 0.5 mm voxels. We confirmed recording locations by listening for characteristic sounds of white and grey matter during recording, which in all cases matched the loci indicated by the Brainsight system.
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4

Prefrontal Cortex Recordings in Primates

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Once the animals had reached asymptotic performance in the behavioral tasks, a 20-mm diameter recording cylinder was implanted over the prefrontal cortex of each animal. Localization of the recording cylinder and of electrode penetrations within the cylinder was based on MR imaging, processed with the BrainSight system (Rogue Research, Montreal, Canada). Recordings were collected with epoxylite-coated Tungsten electrodes with a diameter of 250 μm and an impedance of 4 MΩ at 1 KHz (FHC Bowdoin, ME). Electrical signals recorded from the brain were amplified, band-pass filtered between 500 and 8 kHz, and stored through a modular data acquisition system at 25 μs resolution (APM system, FHC, Bowdoin, ME). Recordings were obtained and analyzed from areas 8a and 46 of the dorsolateral prefrontal cortex. After reaching adulthood, determined with the developmental indices described above, the animals were again tested in the same tasks that they were originally trained. A new phase of recordings was then performed from the same areas using identical recording methods.
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5

Motor Cortex Stimulation for Soleus MEP

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Single-pulse TMS (Magstim Bistim2, Magstim Company Ltd., UK) was applied using a double-cone coil (70 mm outer diameter) over the leg area of the left primary motor cortex while the subject was standing. The optimal position (hotspot) for evoking MEP preferentially in the right SOL was determined. The hotspot was defined as the scalp position where the stimulus produced the largest motor evoked potential (MEP) amplitude in the right SOL at a given intensity [42 (link)–44 (link)]. Overall, this location was slightly to the left side of the vertex (mean of 1.2 cm left of the vertex). The hotspot was visualized on a computer through a neuronavigation system (Brainsight system; Rogue Research, Canada), by placing trackers both on the coil and on the subject. With this system, the coil was maintained at the same position throughout the experiment. The coil was held by an experimenter and positioned at around 45 degrees away from the midline over this hotspot to induce a current flow in an antero-medial direction in the targeted area [45 (link)]. The active motor threshold (aMT) was determined as the stimulus intensity at which 5 of 10 stimuli evoked a MEP bigger than 100 μV of amplitude in the contracted right SOL [31 (link)]. Stimulus intensity was set at 1.2 aMT for Part A and 0.95 aMT for Parts B and C.
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6

Rhesus Macaque Electrophysiological Recordings

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All animal procedures were approved by the University Committee on Animal Resources at the University of Rochester and were designed and conducted in compliance with the Public Health Service’s Guide for the Care and Use of Animals. Two male rhesus macaques (Macaca mulatta) served as subjects. We used standard electrophysiological techniques as described previously (Strait, Blanchard, & Hayden, 2014 (link)).
A small prosthesis for holding the head was used. Animals were habituated to laboratory conditions and then trained to perform oculomotor tasks for liquid reward. A Cilux recording chamber (Crist Instruments) was placed over the striatum. Position was verified by MRI with the aid of a Brainsight system (Rogue Research, Inc.). Animals received appropriate analgesics and antibiotics after all procedures. Throughout both behavioral and physiological recording sessions, the chamber was kept sterile with regular antibiotic washes and sealed with sterile caps.
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7

Theta Burst Stimulation of Pars Triangularis

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The Brainsight system (Rogue Research, Montreal) was used to co-register MRI data with the location of the subject and the TMS coil. The stimulation site was defined as the posterior extent of the pars triangularis in each individual subject’s registered T1 image. A Magstim Super Rapid2 Plus1 stimulator (Magstim; Whitland, UK) was used to deliver continuous theta burst stimulation (cTBS) via a 70 mm diameter figure-eight coil. cTBS was delivered at 80% of each participant’s active motor threshold [73 (link)]. Each participant’s threshold was determined prior to the start of the experimental session using a standard up-down staircase procedure with stimulation to the motor cortex [M1]. The measured thresholds (given in units measured as the percentage of machine output from the Magstim device) for the 10 participants were 68, 60, 46, 57, 37, 36, 44, 39, 46, and 65, respectively.
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8

Oculomotor Task Training in Rhesus Macaques

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All procedures were approved by either the University Committee on Animal Resources at the University of Rochester or the IACUC at the University of Minnesota. Animal procedures were also designed and conducted in compliance with the Public Health Service’s Guide for the Care and Use of Animals. All surgery was performed under anesthesia. Male rhesus macaques (Macaca mulatta) served as subjects. A small prosthesis was used to maintain stability. Animals were habituated to laboratory conditions and then trained to perform oculomotor tasks for liquid rewards. We placed a Cilux recording chamber (Crist Instruments) over the area of interest. We verified positioning by magnetic resonance imaging with the aid of a Brainsight system (Rogue Research). Animals received appropriate analgesics and antibiotics after all procedures. Throughout both behavioral and physiological recording sessions, we kept the chamber clean with regular antibiotic washes and sealed them with sterile caps.
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9

Rhesus Macaque Surgical Implantation

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Two male rhesus macaques (Macaca mulatta) served as subjects. Standard surgical techniques, described previously [99 (link)], were used to implant a small prosthesis for holding the head and Cilux recording chambers (Crist Instruments, Hagerstown, Maryland, United States of America). Chamber positions were verified by magnetic resonance imaging with the aid of a Brainsight system (Rogue Research, Montréal, Quebec, Canada). Neuroimaging was performed prior to surgery at the Rochester Center for Brain Imaging on a Siemens 3T MAGNETOM Trio Tim using 0.5-mm voxels.
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10

Neuromodulation of Language Regions via cTBS

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The Brainsight system (Rogue Research) was used to co-register MRI data with the location of the subject and the TMS coil. The stimulation site was defined as the posterior extent of the pars triangularis in each individual subject’s registered T1 image. A Magstim Super Rapid2 Plus1 stimulator (Magstim) was used to deliver cTBS via a 70-mm diameter figure-eight coil. cTBS consisted of 50 Hz triplets administered every 200 ms (i.e., 5 Hz; Huang et al., 2005 (link)) for 600 total pulses. To calibrate the intensity of stimulation, cTBS was delivered at 80% of each participant’s active motor threshold (Huang et al., 2005 (link)). Each subject’s threshold was determined before the start of the experimental session using a standard up-down staircase procedure with stimulation to the motor cortex (M1). In the sham condition, the coil was held against the head at a 90° angle at the subject’s vertex to introduce a degree of induced electrical stimulation of the scalp. We administered sham at vertex to reduce the possibility that subjects could see the orientation of the coil in the sham condition, as subjects were not naive to TMS.
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