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Human hap370cnv

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The Human-Hap370CNV is a high-throughput genotyping array designed to detect copy number variations (CNVs) across the human genome. It provides comprehensive coverage of common and rare CNVs, enabling researchers to study the role of structural variations in various diseases and traits.

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Lab products found in correlation

610 quad, by Illumina (2 mentions) Ht 12 v3, by Illumina (2 mentions) Humanhap300, by Illumina (2 mentions) Genomestudio, by Illumina (1 mentions)

3 protocols using human hap370cnv

1

Genetic Insights into Plasma Cortisol

Cited 2 times
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Genotypes for the SERPINA6/SERPINA1 gene region (chr14:94,770,585–94,857,029, build 37) in the CROATIA-Korcula samples (n = 898) were extracted from an Illumina Exome Chip v1 analysis. Genotypes were called in GenomeStudio (Illumina) using the CHARGE Consortium joint calling cluster file (http://www.chargeconsortium.com/main/exomechip) [48] (link). 1000 Genomes imputation was performed using genotypes from Illumina HumanHap370CNV after quality control (Individual Call Rate 97%, SNP Call Rate 98%, MAF 0.01, HWE 1×10−6); prephasing was performed using ShapeIt v2 [49] (link) and imputation using IMPUTE2 [50] (link) and the ALL (Phase 1 integrated release v3, April 2012) reference panel. Associations with plasma cortisol were analysed in GenABEL [51] (link).
Bolton J.L., Hayward C., Direk N., Lewis J.G., Hammond G.L., Hill L.A., Anderson A., Huffman J., Wilson J.F., Campbell H., Rudan I., Wright A., Hastie N., Wild S.H., Velders F.P., Hofman A., Uitterlinden A.G., Lahti J., Räikkönen K., Kajantie E., Widen E., Palotie A., Eriksson J.G., Kaakinen M., Järvelin M.R., Timpson N.J., Davey Smith G., Ring S.M., Evans D.M., St Pourcain B., Tanaka T., Milaneschi Y., Bandinelli S., Ferrucci L., van der Harst P., Rosmalen J.G., Bakker S.J., Verweij N., Dullaart R.P., Mahajan A., Lindgren C.M., Morris A., Lind L., Ingelsson E., Anderson L.N., Pennell C.E., Lye S.J., Matthews S.G., Eriksson J., Mellstrom D., Ohlsson C., Price J.F., Strachan M.W., Reynolds R.M., Tiemeier H, & Walker B.R. (2014). Genome Wide Association Identifies Common Variants at the SERPINA6/SERPINA1 Locus Influencing Plasma Cortisol and Corticosteroid Binding Globulin. PLoS Genetics, 10(7), e1004474.
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2

Fehrmann Peripheral Blood Expression Dataset

Cited 1 time
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n = 1240 The Fehrmann dataset12 (link) consists of peripheral blood samples of 1240 unrelated individuals from the United Kingdom and the Netherlands. Some of these individuals are patients, while others are healthy controls. Individuals were genotyped using the Illumina HumanHap300, Illumina Human-Hap370CNV, and Illumina 610 Quad platforms. RNA levels were quantified using the Illumina HT-12 V3.0 platform. These data are accessible through GEO Series accession numbers GSE20332 and GSE20142.
Hemani G., Shakhbazov K., Westra H.J., Esko T., Henders A.K., McRae A.F., Yang J., Gibson G., Martin N.G., Metspalu A., Franke L., Montgomery G.W., Visscher P.M, & Powell J.E. (2014). Detection and replication of epistasis influencing transcription in humans. Nature, 508(7495), 249-253.
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3

Fehrmann Peripheral Blood Expression Dataset

Cited 1 time
Check if the same lab product or an alternative is used in the 5 most similar protocols
n = 1240 The Fehrmann dataset12 (link) consists of peripheral blood samples of 1240 unrelated individuals from the United Kingdom and the Netherlands. Some of these individuals are patients, while others are healthy controls. Individuals were genotyped using the Illumina HumanHap300, Illumina Human-Hap370CNV, and Illumina 610 Quad platforms. RNA levels were quantified using the Illumina HT-12 V3.0 platform. These data are accessible through GEO Series accession numbers GSE20332 and GSE20142.
Hemani G., Shakhbazov K., Westra H.J., Esko T., Henders A.K., McRae A.F., Yang J., Gibson G., Martin N.G., Metspalu A., Franke L., Montgomery G.W., Visscher P.M, & Powell J.E. (2014). Detection and replication of epistasis influencing transcription in humans. Nature, 508(7495), 249-253.
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