The largest database of trusted experimental protocols

10 protocols using ab47285

1

Protein Quantification via RIPA Extraction

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total protein of tissues or cells was extracted with the radioimmunoprecipitation assay (RIPA) lysis buffer (Solarbio Science Technology) in accordance with the instructions. Protein concentration was determined using the bicinchoninic acid (BCA) kit. The proteins were transferred to the polyvinylidene fluoride (PVDF) membrane and then blocked with non‐fat milk for 1 hour at room temperature. The member was incubated with the primary antibodies (anti‐FOXO3, Abcam, ab47285, anti‐ABCB1, Abcam, ab170904, 1:1000). The ImageJ software was used for protein quantification analysis according to the ratio of the grey value of control GAPDH band.
+ Open protocol
+ Expand
2

Western Blot Analysis of Myocardial Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Myocardial tissues frozen and stored at −80 °C were taken and minced with scissors, to which cold RIPA tissue lysate was added to extract proteins. After determining the protein concentration, equal amounts of protein per group were resolved by 10% SDS-PAGE and transferred to a PVDF membrane (Millipore, Burlington, MA, USA), which was blocked by 5% skim milk for 1 h at room temperature. The PVDF membranes were subsequently incubated with primary antibodies against FOXO3 (1:1,000; ab109629), p-FOXO3 (1:1,000; ab47285), Mst1 (1:1,000; ab51134), Sirt3 (1:1,000; ab217319), AMPK (1:1,000; ab214425), p-AMPK (1:1,000; ab129081) and GAPDH (1:2,500; ab181602) from Abcam overnight at 4 °C. On the next day, PVDF membranes were washed in PBS with 0.1% Tween-20 and then incubated with a peroxidase-conjugated goat anti-rabbit IgG secondary antibody for 2 h at room temperature. Next, the ECL working solution was incubated with the membrane and molecular imaging was performed using a molecular imager. The resulting images were photo analyzed with ImageJ analysis software for the developed protein bands.
+ Open protocol
+ Expand
3

Western Blot Analysis of Cellular Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein-matched samples (Bradford assay) were electrophorized [SDS-polyacrylamide gel electrophoresis (PAGE)] and then transferred onto nitrocellulose membranes. These were blocked with 5% skimmed milk in TBST (25 mmol/l Tris base, 150 mmol/l NaCl and 0.1% Tween 20) for 2 h at room temperature and then incubated with primary antibody at 4°C overnight. Following incubation, the membranes were treated with a secondary antibody (1:5000) at room temperature for 1 h, followed by three washes (10 min each) with TBST. Target proteins were detected with enhanced chemiluminescence (ECL) plus detection reagents (Amersham, Pittsburgh, PA, USA). Expression levels were quantified by optical densitometry using ImageJ software (http://rsbweb.nih.gov). Western blotting was performed with the following antibodies: anti-p-SGK1/SGK1 (1:1000; ab55281/ab59337; Abcam, Cambridge, UK), anti-p-FOXO1 (1:1000; #9464; Cell Signaling Technology, MA, USA), anti-p-FOXO3 (1:1000; ab47285; Abcam), anti-FOXO1/FOXO3 (1:1000; ab39670/ab12161; Abcam), anti-lamin B (1:2000; sc-6217; Santa Cruz Biotechnology, Santa Cruz, CA, USA) and anti-glyceraldehyde 3-phosphate dehydrogenase (GAPDH; 1:2000; sc-365062; Santa Cruz Biotechnology).
+ Open protocol
+ Expand
4

Western Blot Analysis of Cardiac Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cardiac muscle (25–50 mg) was homogenized as previously reported [22 (link)] and 5μg of homogenate loaded for SDS-PAGE. Proteins were separated on a 6%, 7.5%, 10% or 12% resolving gel as required to optimize for MW separation, and transferred to polyvinylidene difluoride membrane (Roche, Laval, QC, CA). The following commercially available antibodies were used: total OXPHOS antibody cocktail (Abcam, Cambridge, MA, USA, ab110413, 1:500,), eNOS (Abcam, ab5589, 1:1000), VEGF (Abcam, ab46154, 1:1000), HIF1α (Abcam, ab463, 1:1000), alpha tubulin (Abcam, ab40742, 1:5000), muscle RING finger protein-1 (MuRF1; Santa Cruz Biotechnology, Dallas, TX, USA, sc-32920, 1:500), Muscle atrophy F-box (MAFbx; Santa Cruz, sc33782, 1:500), forkhead transcription factor-3a, Serine residue 253 (FOXO3a Ser253; Abcam, ab47285, 1:500), atrial natriuretic peptide (ANP; Abcam, ab180649, 1:500), BNP (Abcam, ab19645, 1:500) and beta-myosin heavy chain (β-MHC; Abcam, ab172967, 1:2000). All samples were detected from the same Western blot by cutting gels and transferring onto a single membrane to limit variability. Equal loading of protein was verified using Ponceau staining as well as constant alpha tubulin. All blots were quantified using enhanced chemiluminescence (Perkin Elmer, Woodbridge, ON, CA) and quantified by densitometry (Alpha Innotech Fluorchem HD2, Fisher Scientific, Ottawa, ON, CA).
+ Open protocol
+ Expand
5

Western Blot Analysis of CTCF and FoxO Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Samples containing 20 μg of total protein were separated on 8%‐12% SDS‐PAGE gels according to the different molecular weights and then transferred onto nitrocellulose membranes (Whatman, Germany) in transfer buffer using a Mini Trans‐Blot Cell (Bio‐Rad) at 400 mA for 2 hours. The membranes were blocked by incubating them in 5% nonfat milk in TBS‐T for 1 hour at room temperature. Proteins were detected using specific rabbit polyclonal anti‐CTCF (1:1000, ab203312; Abcam, USA), rabbit polyclonal anti‐pFoxO1a (1:200, ab131339; Abcam), rabbit polyclonal anti‐FoxO1a (1:500, ab70382; Abcam), rabbit polyclonal anti‐pFoxO3a (1 μg/mL, ab47285; Abcam), rabbit polyclonal anti‐FoxO3a (5 μg/mL, ab23683; Abcam), rabbit polyclonal anti‐Lamin B1 (1 μg/mL, ab65986; Abcam) and rabbit polyclonal anti‐GAPDH (5 μg/mL, ab9485; Abcam) antibodies. After being washed with TBS‐T, the membranes were incubated with goat anti‐rabbit immunoglobulin G secondary antibodies (1:50 000, ab205718; Abcam) in TBS‐T containing 5% nonfat milk for 45 minutes at room temperature. The grey value of bands was analysed by enhanced ImageJ (Version 1.48u; MD, USA).
+ Open protocol
+ Expand
6

Western Blot Analysis of PI3K/AKT Pathway

Check if the same lab product or an alternative is used in the 5 most similar protocols
The cells were lysed on ice in radio immunoprecipitation assay lysis buffer containing a mixture of proteinase and phosphatase inhibitors for 30 min and then centrifuged at 13,000 g for 10 min. The protein concentration was subsequently measured using a bicinchoninic acid kit. A total of 20 μg protein was separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and then transferred onto a polyvinylidene difluoride membrane. Subsequently, the membranes were blocked with 5% BSA and incubated with the diluted primary antibodies against pFOXO3S253 (1:2000, ab47285, Abcam), PI3K (1:5000, ab1549, Abcam), pPI3KY607 (1:5000, ab182654, Abcam), AKT1 (1:5000, ab235958, Abcam), pAKT1S473 (1:50, ab812, Abcam) and Snail (1:50, ab53519, Abcam) at 4°C overnight. After 3 rinses with Tris-buffered saline Tween-20 (TBST), the membranes were incubated with the horseradish peroxidase (HRP)-conjugated goat anti-rabbit secondary antibody (1:10,000, ab7090, Abcam) for 1 h. After 3 rinses with TBST, the membranes were visualized using a SuperSignal West Pico Kit (Thermo Fisher Scientific Inc). Images were captured using the ChemiDoc™ XRS (Bio-Rad, Inc., Hercules, CA, USA). β-actin was regarded as the loading control. The expression of target protein = gray value of target protein bands/gray value of β-actin.
+ Open protocol
+ Expand
7

Western Blot Analysis of Apoptosis Regulators

Check if the same lab product or an alternative is used in the 5 most similar protocols
After incubation and transfection, the cell suspension was harvested, centrifuged,
and lysed in a lysis buffer. Total protein was extracted from the cells and measured
using a BCA assay kit (Pierce, USA). After boiling for 10 min, the protein samples
were subjected to a 10–12% sodium dodecyl sulfate (SDS)-polyacrylamide gel
electrophoresis (PAGE) and transferred to polyvinylidene fluoride (PVDF) membranes
(Bio-Rad Benchmark). Subsequently, the cells were washed with phosphate buffer saline
(PBS) and blocked with 5% skim milk in Tris buffered saline with tween (TBS-T) for 1
h. The membranes were then maintained in the following primary antibodies overnight
at 4°C: anti-FOXO1 antibody (ab52857, Abcam, UK), anti-FOXO3 antibody (ab47285,
Abcam), anti-Bcl-2 interacting mediator of cell death (Bim) antibody (ab32158,
Abcam), anti-pro-caspase-3 antibody (ab32150, Abcam), and anti-active caspase-3
antibody (ab2302, Abcam). Membranes were washed twice with TBS-T and then incubated
with horseradish peroxidase-conjugated secondary antibodies for 2 h. The protein
bands were visualized with WEST-ZOL-plus Western Blot Detection System (Intron
Biotechnology, Inc., Korea). Probing for GAPDH was used as a loading control.
+ Open protocol
+ Expand
8

Cardiac Protein Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cardiac tissue homogenate proteins from the left ventricular tissue were separated by SDS-PAGE gels and transferred to nitrocellulose membranes. Standard Western blots analysis were performed using antibodies against p-VEGFR1 (R&D Systems, AF4170), VEGFR1 (Abcam, ab32152), p-AKT (Abcam, ab81283), AKT (Abcam, ab32505), p-GSK3β (Abcam, ab75745), GSK3β (Abcam, ab32391), p-FOXO3a (Abcam, ab47285), FOXO3a (Abcam, ab109629) and Cleaved Caspase-3 (CST, 9664s). Nitrocellulose membranes were then incubated with HRP-conjugated IgG antibody. Blotting was analyzed using ImageJ software.
+ Open protocol
+ Expand
9

Protein Expression Analysis of Cell Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell suspension was prepared and the cells were treated according to the preset drug concentration and time. Sodium dodecyl sulfate lysis buffer was added, and the cells were placed on ice for 20 minutes. Then, the protein concentration was measured using the bicinchoninic acid assay method, the sample was loaded and transferred to the membrane after electrophoresis, the milk blocking solution was sealed for approximately 1 hour, the primary antibodies were incubated, and the protein was then placed in a 4°C refrigerator (12–18 hours). The primary antibodies used were anti-Bcl-2-associated X protein (Bax) (ab32503, 1/1,000), anti-cleaved-caspase-3 (ab32042, 1/500), anti-B-cell lymphoma-2 (ab32124, 1/1,000), anti-AKT (ab233755, 1/1,000), anti-p-AKT (phospho T308; ab38449, 1/1,000), anti-FOXO3 (ab23683, 1 µg/mL), anti-p-FOXO3 (phospho S253; ab47285, 1/1,000), and anti-glyceraldehyde 3-phosphate dehydrogenase (all from Abcam, Boston MA, USA). The secondary antibody was added and incubated at room temperature in a shaker for 1 hour. The i-Bright FL1000 gel imaging system was then used for development and fixing.
+ Open protocol
+ Expand
10

Immunofluorescence Assay for Podocytes

Check if the same lab product or an alternative is used in the 5 most similar protocols
For the immunofluorescence assay, podocytes and rat kidneys were fixed in 4% paraformaldehyde. The kidneys were cut into 5 μm sections. The cryosections were deparaffinized with xylene and rehydrated using a graded ethanol series. The podocyte cells and kidney sections were blocked with 1% bovine serum albumin for 1 h, incubated with primary antibodies for 1 h at room temperature in a humidified chamber, and then incubated with a donkey anti-goat 488-conjugated secondary antibody (ab150129, Abcam) or goat anti-rabbit 568-conjugated secondary antibody (ab175471, Abcam) at room temperature for 1 h. The following antibodies were used: rabbit anti-GLCCI1 (1:100, ab107491, Abcam), goat anti-nephrin (1:100, sc-19000, Santa Cruz Biotechnology), rabbit anti-podocin (1:100, sc-21009, Santa Cruz Biotechnology), goat anti-synaptopodin (1:100, sc-21536, Santa Cruz Biotechnology), rabbit anti-SGK1 (1:100, ab59337, Abcam) and rabbit anti-FOXO3A (1:100, ab47285, Abcam). All images were obtained using a Carl-Zeiss LSM 700 confocal microscope (Carl-Zeiss, Jena, Germany).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!