The protein lysate was reduced with 45 mM
dithriothreitol (Sigma
Aldrich, MO), alkylated with 100 mM
iodoacetamide (Sigma Aldrich, MO), and
subsequently digested with modified sequencing grade
Trypsin (Promega,
Madison, WI) at 30°C overnight. The digest was then acidified using
0.1% TFA and the peptides were desalted using solid phase extraction C18
column (Supelco, Bellefonte, PA), and vacuum dried in a centrifugal
evaporator.
Roper N., Gao S., Maity T.K., Banday A.R., Zhang X., Venugopalan A., Cultraro C.M., Patidar R., Sindiri S., Brown A.L., Goncearenco A., Panchenko A.R., Biswas R., Thomas A., Rajan A., Carter C.A., Kleiner D.E., Hewitt S.M., Khan J., Prokunina-Olsson L, & Guha U. (2019). APOBEC Mutagenesis and Copy-Number Alterations Are Drivers of Proteogenomic Tumor Evolution and Heterogeneity in Metastatic Thoracic Tumors. Cell reports, 26(10), 2651-2666.e6.