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3 protocols using genegenome system

1

Mitochondrial Protein Analysis in VSMCs

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Cells were lysed in radioimmunoprecipitation assay (RIPA) buffer containing Protease Inhibitor Cocktail (Thermo Fisher Scientific, Waltham, MA, USA) and total protein concentration measured using a commercially available BCA protein assay (Thermo Scientific). Mitochondrial fractions were isolated from cultured VSMCs using a commercial kit (89874; Thermo Scientific). Immunoblotting was performed as previously described [55 (link)]. Nitrocellulose membranes were incubated for up to 16 h at 4 °C with primary antibodies (1:1000 dilution in 5% milk in TBST), p53 (7F5; Cell Signaling Technology), p21 (2947; Cell Signaling Technology), TOM20 (DBT4N; Cell Signaling Technology), OPA1 (ab157457; Abcam, Cambridge, UK), DRP1 (ab184247; Abcam), DRP1-pS637 (BT-PHS00841; Bioassay Technology Laboratory, Birmingham, UK), TNAP (MAB 2909; R & D Systems, Minneapolis, MN, USA) and OCN (ab93876; Abcam). Membranes were then probed with HRP-conjugated goat anti-rabbit IgG (P0448; Dako) and goat anti-rat IgG (HAF005; Dako, Glostrup, Denmark) for 1 h. Membranes were developed using the GeneGenome system (Syngene, Frederick, MD, USA). Membranes were then washed and re-probed for mouse β-actin expression (1:10,000; A3845; Sigma). Semi-quantitative assessment of band intensity was performed using ImageJ image analysis software.
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2

Protein Quantification and Immunoblotting

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VICs were collected with radioimmunoprecipitation assay (RIPA) lysis buffer (Thermo Fisher Scientific) supplemented with Protease and Phosphatase Inhibitor Cocktail (Thermo Fisher Scientific) and total protein concentration was determined (Thermo Fisher Scientific). Immunoblotting was performed as previously described.38 Equal amounts of protein lysates were separated by sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS‐PAGE) and transferred to polyvinylidene difluoride (PVDF) membranes (Millipore). After blocking with 5% (v/v) skimmed milk in Phosphate Buffered Saline Tween‐20 (PBST), membranes were incubated overnight at 4 °C with primary antibodies (Table S3) diluted in 5% skimmed milk. Subsequently, membranes were incubated with HRP‐conjugated anti‐mouse (1:1000, P0047, Dako) or anti‐rabbit (1:1000, P0048, Dako) secondary antibodies at RT for 1 h. Membranes were developed using the GeneGenome system (Syngene). Semi‐quantitative assessment of band intensity was performed using ImageJ analysis software (National Institutes of Health).
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3

Western Blot Analysis of Osteogenic Markers

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Cells were lysed in radioimmunoprecipitation assay buffer supplemented with Protease Inhibitor Cocktail (Thermo Fisher Scientific) and total protein concentration determined (Thermo Fisher Scientific). Immunoblotting was performed as previously described (Zhu et al., 2016) .
Nitrocellulose membranes were probed overnight at 4°C with primary antibodies (1:1000 dilution in LICOR blocking buffer or 5% milk in TBST) LC3 (PM036; MBL International), Atg3 (ab108251; Abcam), Runx2 (ab236639; Abcam), AMPKα (D5A2; Cell Signaling Technology), Phospho-AMPKα (Thr172) (40H9; Cell Signaling Technology), osterix (AF7580; Affinity Biosciences), Osteocalcin (ab93876; Abcam), bone sialoprotein (DF7738; Affinity Biosciences). Blots were subsequently incubated in goat anti-rabbit IRDye 680RD (926-68071; Thermo Fisher Scientific) or HRP conjugated goat anti-rabbit IgG (P0449; Dako) for 1 h. Blots were then imaged using an Odyssey CLx Infrared Imaging System (Li-COR) or developed by the GeneGenome system (Syngene).
Membranes were then washed reprobed for β-actin expression (1:1000; 4970; Cell Signaling Technology). For Atg3 studies, β-actin expression was determined on a parallel membrane due to molecular weights.
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