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5 protocols using anti p igf 1r

1

Exosome-mediated Regulation of MSC Signaling

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MSCs were plated in six-well plates at a density of 2 × 105 cells/well for 24 h and treated with exosomes at a concentration of 200 µg for 48 h. After removing the medium, cells were lysed in a buffer (P0013 and 1 mM phenylmethylsulfonyl fluoride (PMSF), Beyotime Institute of Biotechnology, Shanghai, China) for 30 min at 4°C. Exosome sample preparation was similar as before. The supernatant was harvested by centrifuging at 12,000 g for 5 min at 4°C. A bicinchoninic acid (BCA) kit was used to measure protein concentrations. The proteins were separated by 10% sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to nitrocellulose membranes. The membranes were blocked with 5% bovine serum albumin (BSA) for 1 h, detected for anti-HSP70 (EXOAB-Hsp70A-1, System Biosciences, USA), anti-CD63 (EXOAB-CD63A-1, System Biosciences, USA), anti-TSG101 (28283-1-AP, Proteintech, USA), anti-IGFBP2 (11065-3-AP, Proteintech, USA), anti-IGF-2 (ab177467, Abcam, UK), anti-IGF-1R (9750T, Cell Signaling Technology, USA), and anti-p-IGF-1R (Tyr1135, 3918T, Cell Signaling Technology, USA) at 4°C overnight, and then incubated with anti-rabbit IgG conjugated with horseradish peroxidase (HRP) (SA00001-2, Proteintech, USA) for 1 h at room temperature. The Infrared Imaging System (LI-COR Biosciences, Lincoln, NE, USA) was used to scan and analyze the images.
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2

Chromatin Fractionation and Immunoblotting Protocol

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Cells were washed with PBS and lysed on ice for 5 min in NP40 buffer (50 mM Tris pH 7.5, 1% NP40, 150 mM NaCl, 10% Glycerol, 1 mM EDTA) supplemented with protease and phosphatase inhibitors (Roche). Lysates were centrifuged at 15,000 rpm for 15 min and the protein concentration was quantified using BCA (Pierce). Chromatin fractionation performed as described8 (link). All lysates were freshly prepared and supplemented with Laemmli loading buffer with subsequent boiling for immunoblotting. The primary antibodies used for immunoblotting were anti-SIRT6 (1:1000, CST, #12486), anti-IGFBP2 (1:1000, Abcam, ab109284), anti-H3K4me3 (1:2500, Abcam, ab1012), anti-H3K9ac (1:1000, Abcam, Ab10812), anti-H3K27ac (1:1000, Abcam, ab4729), anti-H3K56ac (1:1000, Abcam, ab76307), anti-p-IGF-1R (1:200, Cell Signaling, #3918), anti-IGF-1R (1:1000, Cell Signaling, #3027), anti-p-AKT (1:1000, Cell Signaling, #4060), anti-AKT (1:1000, Cell Signaling, #9272), anti-p-MEK (1:1000, Cell Signaling, #9121), anti-MEK (1:1000, Cell Signaling, #2352), anti-p-ERK (1:1000, Cell Signaling, #4370), anti-ERK (1:1000, Cell Signaling, #9107), anti-KAT1 (1:1000, Santa-Cruz, sc-390562), anti-KAT2B (1:1000, Santa-Cruz, sc-13124), anti-GAPDH (1:1000, Santa-Cruz, sc-32233), anti-b-Actin (1:1000, Sigma, A5441), and anti-Vinculin (1:1000, Sigma, V9131). Uncropped western blots can be found in Supplementary Fig. 12.
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Evaluating IGF-1 Signaling Inhibitors

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des[1–3]IGF-1 (desIGF1) is an N-terminally truncated form of IGF-1 that does not bind appreciably to IGF binding proteins (IGFBPs). It was obtained from Cell Sciences (Canton, MA) and used to mitigate any effect of secreted IGFBPs in vitro. AlamarBlue, DMEM/F-12 media with HEPES, and fetal bovine serum were obtained from Invitrogen (Carlsbad, CA). Lapatinib was obtained from Chemietek (Indianapolis, IN), and gefitinib and erlotinib from LC Laboratories (Woburn, MA). Anti-IGF1R was acquired from Santa Cruz Biotechnology, anti-Akt, anti-p-Akt (T308), anti-p-Akt (S473), anti-PRAS40, anti-p-PRAS40 (T246), anti-p70S6K, anti-p-p70S6K (T389), anti-p-IGF1R, anti-FOXO3a, and anti- β-actin from Cell Signaling Technology (Beverly, MA).
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Immunohistochemical Analysis of Tumor Markers

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Immunohistochemical analyses to detect PCNA, cleaved caspase-3, pIGF-1R, and pSrc expression in the xenograft and PDX tumors were performed as described previously [52 (link)]. In brief, formalin-fixed and paraffin-embedded tissue sections (4 μm) were deparaffinized, dehydrated, and treated with methanol containing 3 % hydrogen peroxide. Slides were incubated with anti-PCNA (Abcam, Cambridge, UK), anti-cleaved caspase-3 (Cell signaling), anti-pIGF-1R (Cell signaling), and anti-pSrc (Cell signaling) antibodies overnight at 4 °C, followed by incubation with biotinylated secondary antibodies (Vector Laboratories, Burlingame, CA, USA) for 1 hour at room temperature. Signals were detected using Diaminobenzidine Substrate kit (Vector Laboratories). Slides were counterstained with hematoxylin. The detailed procedures for immunohistochemical analysis and scoring of tissue microarray were described in our previous report [15 (link)].
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5

IGF-Neutralizing Antibody Profiling

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BI836845, a humanized IGF ligand‐neutralizing antibody, was kindly provided by Dr. Ulrike Weyer‐Czernilofsky (Boehringer Ingelheim). Anti‐pIGF‐1R, anti‐IGF‐1R, anti‐pAkt‐Thr308, anti‐pAkt‐Ser473, anti‐pERK and anti‐Snail antibodies were purchased from Cell Signaling (Danvers). Anti‐IGFBP‐3, anti‐IGFBP‐6, anti‐ERK, anti‐vimentin (Santa Cruz Biotechnology, Dallas), anti‐E‐cadherin (BD biosciences, Franklin Lakes) and anti‐α‐tubulin (Sigma‐Aldrich, Saint Louis) antibodies were also purchased.
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